Gene detail

Detail information of GWHGAAZE030499

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007210154.1	0	hypothetical protein PRUPE_ppa023761mg [Prunus persica]
COG	YP_003640725.1	5E-23	serine/threonine protein kinase
Swissprot	tr\|F4IB81\|LYK3_ARATH	2E-85	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|M5WPX3\|M5WPX3_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11353.1}
TAIR10	AT1G51940.1	1E-74	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44442613	44445344	+
GWHAAZE00000009	mRNA	44442613	44445344	+
GWHAAZE00000009	exon	44442613	44443096	+
GWHAAZE00000009	exon	44443953	44444092	+
GWHAAZE00000009	exon	44444185	44444274	+
GWHAAZE00000009	exon	44444362	44444518	+
GWHAAZE00000009	exon	44444615	44444766	+
GWHAAZE00000009	exon	44444900	44444997	+
GWHAAZE00000009	exon	44445194	44445344	+
GWHAAZE00000009	CDS	44442613	44443096	+
GWHAAZE00000009	CDS	44443953	44444092	+
GWHAAZE00000009	CDS	44444185	44444274	+
GWHAAZE00000009	CDS	44444362	44444518	+
GWHAAZE00000009	CDS	44444615	44444766	+
GWHAAZE00000009	CDS	44444900	44444997	+
GWHAAZE00000009	CDS	44445194	44445344	+

Transcript Sequence
>GWHTAAZE030533 ATGGACCAAATAGCTTCTTTCTACACGGTTAACACGTCCCAAATCAGACCCATATCCCGCGGTACCAAACAAGACTTTATGATATATGTTCCTTGTACTTGCAAGGACTTCTATGGAGCTAACAGGTACTTTTATGATACCTCATATAAGGTACAAGAAGGTGACTTAGTTGAAAGCGTCTCGGAAGAATTTTATAGCGGGCAAGTGTTGAAGGATACTGCAGAAGAATTGCAATTTATTGCTGGAAATATGGTCACTATGCATCTTGTTTGTGGGTGTGTGGAAAGAGAGTCACAAGAGGTAGTAGTGACATACACTGTTCAAGAGGATGATACTTTATTAGCCATTGCTGAGCTTTTATCTGCAAAAGTAAGTGAGATTGAGAACTTGAATGCAAAGTTGACTCAAGATCCTGGTTATATAGACGTTGGGTGGGTGTTGTTTGTACCAATGGAGACAAAAGGAATTCAAAAACCCAAAAAACATGTGACAAAAATAGAGCCAGAGAAACCTGTTATATTTAGTTTGGAGGAGGTGGATGAGGCTACAAATCACTTCGACGAAACCAAGAAAATAGGAGAGGGTGGATATGGAAGTGTATACTTTGGCATAATAAGAGGATGGGAAGTTGCAATTAAGAAGATGAAGGCAAGCAAGACAAAGGAGTTTTTTGTGGAGCTCAAGGTCCTCTGCAGAATACATCACATTAATGTGGTGGAACTGCTGGGGTATGCAAGCGGAGACAACCATTTGTATTTAGTATACGATTATGTTCAGAATGGATCGCTTAATGACCATCTTCATGATCCTTTGCTGAAAGGCAAGTATAAACGCCTTTGTTTCTCTGAATGTAACAATATAAAGGAATCAGGTCACCAGCCTCTTTCATGGACAGCAAGAGCACATATAGCACTAGATGCTGCCAGGGGAGTAGAATACATTCACGATCATACAAAGGCACGTTATGTGCACCGCGATATTAAGACAGCCAACATTCTTCTCGATCGGGAACTCAGGGCAAAGATTGCAGATTTTGGATTGGCAAAGCTTGTAGAACGATCATATGATGGTGATTTTATAGCGACACGCCTAGTTGGGACACCTGGTTATCTACCTCCTGAGTCCTTGAGCGAGCTGCAAACGACCTCTAAAACTGATGTTTTTGCATTCGGGGTGGTCCTATCAGAGTTGATAACTGGTCAGCGTGCACTTGTTCGTGATGACCAGGAACCAAACAAGATGAAGTCACTAATATCACTTGTAAGTATATAA

Network for GWHGAAZE030499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01476.21	LysM	105	150	2.90E-05
PF00069.26	Pkinase	187	412	1.70E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.316
	SRR3591706	second leaf	0.256
	SRR3591707	mature leaf	1.832
	SRR3591708	Shoot apex	0.731
	SRR3591709	Stem	2.247
	SRR3591710	White floral bud	1.209
	SRR3591711	White flower	0.934
	SRR3591712	Green floral bud	0.364
	SRR3591713	Yellow flower	0.470
SRP173429	SRR8316895	Juvenile bud stage	0.730
	SRR8316896	Juvenile bud stage	1.232
	SRR8316897	Juvenile bud stage	0.220
	SRR8316894	Third green stage	0.373
	SRR8316900	Third green stage	0.900
	SRR8316901	Third green stage	0.778
	SRR8316898	Complete white stage	1.248
	SRR8316899	Complete white stage	2.714
	SRR8316903	Complete white stage	2.216
	SRR8316902	Silver flowering stage	1.063
	SRR8316904	Silver flowering stage	1.836
	SRR8316905	Silver flowering stage	0.780
	SRR8316906	Gold flowering stage	0.747
	SRR8316907	Gold flowering stage	0.731
	SRR8316908	Gold flowering stage	1.091
SRP132670	SRR6706286	Control	0.411
	SRR6706287	Light intensity 50%	0.812
	SRR6706288	Light intensity 20%	0.909
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.446
	CNS0095593	Slightly white alabastrum(diploid) 2	0.680
	CNS0095594	Slightly white alabastrum(diploid) 3	0.400
	CNS0095595	Whole white alabastrum(diploid) 2	0.810
	CNS0095596	Whole white alabastrum(diploid) 3	0.668
	CNS0095597	Whole white alabastrum(diploid) 4	0.619
	CNS0095598	Silvery flower (diploied) 1	0.848
	CNS0095599	Silvery flower (diploied) 2	0.897
	CNS0095600	Silvery flower (diploied) 3	1.302
	CNS0095601	Golden flower (diploid) 1	0.951
	CNS0095602	Golden flower (diploid) 2	0.927
	CNS0095603	Golden flower (diploid) 3	0.773
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.774
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.218
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.364
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.284
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.896
	CNS0095610	Silvery flower (tetraploid) 1	3.718
	CNS0095611	Silvery flower (tetraploid) 2	1.215
	CNS0095612	Silvery flower (tetraploid) 3	0.923
	CNS0095613	Golden flower (tetraploid) 1	0.276
	CNS0095614	Golden flower (tetraploid) 2	0.636
	CNS0095615	Golden flower (tetraploid) 3	0.602
CRA001975	CRR073297	Stem 1	0.429
	CRR073298	Stem 2	0.301
	CRR073299	Stem 3	0.157
	CRR073300	Leaf 1	0.615
	CRR073301	Leaf 2	0.645
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.068
	CRR073304	Juvenile bud 2	0.029
	CRR073305	Juvenile bud 3	0.612
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.046
	CRR073308	Third green 3	0.310
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.088
	CRR073312	Silver flowering 1	0.080
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.063
	CRR073316	Gold flowering 2	0.341
	CRR073317	Gold flowering 3	0.176
	CRR073318	Tawny withering 1	0.476
	CRR073319	Tawny withering 2	0.278
	CRR073320	Tawny withering 3	0.998