Gene detail

Detail information of GWHGAAZE030490

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG00890.1	0	DEAD-box ATP-dependent RNA helicase 30 [Gossypium arboreum]
COG	YP_002361140.1	9E-74	DEAD/DEAH box helicase
Swissprot	tr\|Q8W4R3\|RH30_ARATH	0	DEAD-box ATP-dependent RNA helicase 30
trEMBL	tr\|V4TII1\|V4TII1_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR53147.1}
TAIR10	AT5G63120.1	2E-180	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44348329	44352084	+
GWHAAZE00000009	mRNA	44348329	44352084	+
GWHAAZE00000009	exon	44348329	44348384	+
GWHAAZE00000009	exon	44348625	44348720	+
GWHAAZE00000009	exon	44348921	44349378	+
GWHAAZE00000009	exon	44349481	44349660	+
GWHAAZE00000009	exon	44349763	44349924	+
GWHAAZE00000009	exon	44350020	44350174	+
GWHAAZE00000009	exon	44351072	44351164	+
GWHAAZE00000009	exon	44351252	44351337	+
GWHAAZE00000009	exon	44351410	44352084	+
GWHAAZE00000009	CDS	44348329	44348384	+
GWHAAZE00000009	CDS	44348625	44348720	+
GWHAAZE00000009	CDS	44348921	44349378	+
GWHAAZE00000009	CDS	44349481	44349660	+
GWHAAZE00000009	CDS	44349763	44349924	+
GWHAAZE00000009	CDS	44350020	44350174	+
GWHAAZE00000009	CDS	44351072	44351164	+
GWHAAZE00000009	CDS	44351252	44351337	+
GWHAAZE00000009	CDS	44351410	44351656	+
GWHAAZE00000009	three_prime_UTR	44351657	44352084	+

Transcript Sequence
>GWHTAAZE030524 ATGTTCCCTTACGACTCTCGATTTGTCGACCCCGGCTCTTACCGTCAACGTAGAAGTGATCTAATGGGGCAACCACCTCCTGGTACTGCTATGATGGGTGGTGCCGCTCCGAACTTTGGCCGCGGCGGCCCAGCTCCTATGGTGGACCCTCGTGGTGGTCGAAGAGGAGATGGAGGCCGTGGTGGGAGGGGGAGAGGAGGCGGTGATACTGGGAGGGGATTTGATTCCGGTCATGGTGGCGGTGGACGGTTTGGGACTGGGGGTTCTGGTGGAGGTTTTAGTGGCAGTAGGAGTTTTGATGGTGGGCGTAGTGGCGGTAGGAGTTTTGGCGGTGGGCGTGGAGGTGGTGGAAGGAGTTTCGATGGTGGCCGTGGTGGCGGGAGAGGTGGGAGAGGTAGTGGATCAAAGGGAGATTTGGACAATATTGCCCTTCCAAAGCAAGACTTTGGTAACCTAGTTCCATTTGAGAAGAATTTTTATATCGAGTCTCCTTTGGTGAGAGCAATGACCGAGCAAGATGTTGCTGTTTATCGTGCAAGACGAGAGATTACAGTTGAAGGCCATGATGTCCCAAAGCCAATTCGGATGTTTCAGGAGGCAAATTTTCCTGATTACTGCCTTGAGATTATTGCTAGACTGGGTTTTGTTGAGCCAACACCAATTCAATCTCAAGGATGGCCCATGGCTTTGAAAGGAAGAGATCTAATTGGCATTGCCGAGACTGGTTCCGGAAAGACTTTGGCGTATTTGTTGCCTGCTTTGGTTCACGTCAGTGCACAGCCTCGTTTGGCACCAGGTGAAGGTCCCATTGTACTTGTATTGGCACCTACTAGAGAATTGGCTGTTCAGATTCAAGAAGAAACTTCAAAATTTGGAGGATCTGCTGGTATTAGGAGTACATGTATTTATGGTGGCGCCCCCAAAGGACCTCAGATTCGCGATCTTCAAAGAGGTGTTGAAATTGTCATTGCTACACCAGGTCGGTTGATAGATATGTTGGAGGCCCAACGCACAAACTTAAAAAGAGTGACCTACCTTGTGCTTGATGAGGCTGATCGAATGTTGGATATGGGGTTTGAGCCTCAAATCAGGAAAATTGTTGCTCAAATCCGACCAGATAGGCAGACGTTGTATTGGAGTGCAACGTGGCCGAGGGAGGTGGAGACTCTAGCAAGGCAGTTTTTACGTAATGCATATAAGGTGATAATTGGGTCTCTAGTGCTGAAAGCAAATCAATCTATAAACCAGGTTGTTGAAGTCGTGACAGAGGTGGATAAATACAACAGGTTGATGAGATTGCTCAAAGAAGTAATGGATGGAAGCCGAATACTAATATTTGTGGAGACAAAAAAGGGATGTGATCAAGTTACGAAACAGCTGAGAATGAATGGATGGCCAGCTCTATCCATCCATGGTGATAAAAGCCAGGATGAAAGGGATTGGGTCCTGGCTGAGTTTAAAAGTGGCCGGAGTCTTATAATGATTGCCACTGATGTTGCTGCACGTGGTCTTGGTAGGATCACTGTGTGTTAGGAAATTTATGTGGTCTCTTCTTCGTTTAGGTCTTCAACAATTCTGAATATAGGCGAGTCGGCCGGTTGCTGTCCACTTACTCTGTAAAATATAATTTGTGGTTGGGTGCGAAAGAGGCTGGGAGGTTCCACTGTTTTTTGAGCTGTCAACTGCCATATTTCTATGTATCCCATGAGGCAACTTGTCCTTGTAGGTTAAGGATTTAGACGCTGGATTCGGAGGCAACTAAGTTACTTATTTTTGTTGGGACCAGGCTTAGTGTAGTGGTAACCTGTGCTACCCTGGGTTGGATGCCTCTGGTTTCAATCTTGTTGCCTAGGATTTTGCTAAAAAGTAAGAAAAGTATTAAGTAGAATGCTTCATAAGGTACACCTGAATATTGATACTACCTGTGTGTGTGCTGAGAGAGTACGAGTGCCCATGGGTGA

Network for GWHGAAZE030490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	219	390	3.80E-50
PF00271.32	Helicase_C	425	504	1.90E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.569
	SRR3591706	second leaf	16.872
	SRR3591707	mature leaf	21.095
	SRR3591708	Shoot apex	29.390
	SRR3591709	Stem	46.539
	SRR3591710	White floral bud	54.339
	SRR3591711	White flower	63.291
	SRR3591712	Green floral bud	62.169
	SRR3591713	Yellow flower	39.496
SRP173429	SRR8316895	Juvenile bud stage	47.574
	SRR8316896	Juvenile bud stage	72.672
	SRR8316897	Juvenile bud stage	33.717
	SRR8316894	Third green stage	33.264
	SRR8316900	Third green stage	63.468
	SRR8316901	Third green stage	70.609
	SRR8316898	Complete white stage	25.073
	SRR8316899	Complete white stage	88.955
	SRR8316903	Complete white stage	67.704
	SRR8316902	Silver flowering stage	39.035
	SRR8316904	Silver flowering stage	64.018
	SRR8316905	Silver flowering stage	24.171
	SRR8316906	Gold flowering stage	57.376
	SRR8316907	Gold flowering stage	56.370
	SRR8316908	Gold flowering stage	76.006
SRP132670	SRR6706286	Control	49.084
	SRR6706287	Light intensity 50%	55.415
	SRR6706288	Light intensity 20%	61.744
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.744
	CNS0095593	Slightly white alabastrum(diploid) 2	18.573
	CNS0095594	Slightly white alabastrum(diploid) 3	17.613
	CNS0095595	Whole white alabastrum(diploid) 2	17.648
	CNS0095596	Whole white alabastrum(diploid) 3	10.304
	CNS0095597	Whole white alabastrum(diploid) 4	15.979
	CNS0095598	Silvery flower (diploied) 1	25.189
	CNS0095599	Silvery flower (diploied) 2	15.610
	CNS0095600	Silvery flower (diploied) 3	39.878
	CNS0095601	Golden flower (diploid) 1	15.798
	CNS0095602	Golden flower (diploid) 2	45.947
	CNS0095603	Golden flower (diploid) 3	41.468
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.539
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.693
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.408
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.861
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.008
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.684
	CNS0095610	Silvery flower (tetraploid) 1	77.505
	CNS0095611	Silvery flower (tetraploid) 2	63.777
	CNS0095612	Silvery flower (tetraploid) 3	84.892
	CNS0095613	Golden flower (tetraploid) 1	34.711
	CNS0095614	Golden flower (tetraploid) 2	53.498
	CNS0095615	Golden flower (tetraploid) 3	49.548
CRA001975	CRR073297	Stem 1	115.375
	CRR073298	Stem 2	88.235
	CRR073299	Stem 3	36.180
	CRR073300	Leaf 1	97.208
	CRR073301	Leaf 2	90.712
	CRR073302	Leaf 3	21.233
	CRR073303	Juvenile bud 1	18.983
	CRR073304	Juvenile bud 2	11.224
	CRR073305	Juvenile bud 3	25.499
	CRR073306	Third green 1	8.247
	CRR073307	Third green 2	8.516
	CRR073308	Third green 3	9.398
	CRR073309	Second white 1	8.305
	CRR073310	Second white 2	12.901
	CRR073311	Second white 3	13.755
	CRR073312	Silver flowering 1	19.639
	CRR073313	Silver flowering 2	19.889
	CRR073314	Silver flowering 3	18.412
	CRR073315	Gold flowering 1	14.971
	CRR073316	Gold flowering 2	38.219
	CRR073317	Gold flowering 3	15.409
	CRR073318	Tawny withering 1	37.625
	CRR073319	Tawny withering 2	33.435
	CRR073320	Tawny withering 3	30.167