Gene detail

Detail information of GWHGAAZE030488

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009613738.1	0	PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Nicotiana tomentosiformis]
COG	YP_001958461.1	3E-26	hypothetical protein Aasi_1443
Swissprot	tr\|Q9M9E0\|LRKS1_ARATH	0	L-type lectin-domain containing receptor kinase S.1 (Precursor)
trEMBL	tr\|K4BK85\|K4BK85_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g112310.1.1}
TAIR10	AT1G15530.1	0	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44328717	44330663	+
GWHAAZE00000009	mRNA	44328717	44330663	+
GWHAAZE00000009	exon	44328717	44329227	+
GWHAAZE00000009	exon	44329258	44330663	+
GWHAAZE00000009	CDS	44328717	44329227	+
GWHAAZE00000009	CDS	44329258	44330663	+

Transcript Sequence
>GWHTAAZE030522 ATGCTTCCTCTACTCGTTACCTTCCTCATCCTAACAACAGCCGCCCCTTCCATTTTTGCCCTCGACTTTCTCTATAATTCCTTCAATGCCACCACCAACCTCCTCCTCACCGGCGACGCCCAACTCGACCCGCCGGTGATCCGACTCACCAACGACTCCAACCAATTCTCCATCGGCCGATTCTTCCACTCCTCACAAATCCCACTAAAACCCACCTCCAATTCCACTACCCTATCATCTTTCTCCACCCAATTTATCTTCTCAGTCTTACCAGAAATCAGTTCAAGCCCCGGATTCGGCATTGCTTTCGTTCTTTCCGGTTCCACGTCACCTCCAGGCGCTCTCTCCGGCCAGTACTTCGGTCTTTTCTCGAATTCCACTGTCCAAACCGTGGCCCCTCTCCTCGCAGTCGAGTTTGACACCGGCCGGAACCCGGAATTCAATGACCCAGATGGGAATCATGTCGGTATCGATTTAAATAACATCGAATCGACGGTTACACGGACTGCTGTTCCGGTGGATATGAGAAATGGGCAGAATATACACGCTTGGATTGAATTTGATGGATCAAGATTTGAGATTAATGTTACAATTGCTCCCGCGGGTATGGGTAAGCCTTTAAGGCCTTTGCTTTCGTTTCGAAATCCGATTATAGCTAATTATGTATCTACTGAGAGCTATGTTGGGTTTTCTTCATCTAAGACTACTTGGATTGAAGCACAGAGGGTTTTAGCTTGGAGTTTGAGCGATACTGGTGTTGCTAGAGATATTAATACTTCAAATTTGCAAGTTTTCTCGGTAGAATCTTCGTCTTCTTCGCTATCGAATGGAGCCATTGCGGGTATTACAATTGGTTGTGTTTTTGTTGTTCTCCTTTGCTTGGGTGTTTGTTACTGGTTTTGGAGAAAACAGAACCAAGAGAATGATGAGATAGAGGATTGGGAACTTGAGTATTGGCCTCATAGGTACTCTTACGAAGAGCTTAGCAAGGCTACTAATGGATTCTCTAAAGATGAGGTTCTCGGGTCTGGTGGATTTGGTCAAGTTTACAAGGCAACACTACCCAATAACACGGAAGTGGCTGTTAAGTGTGTAAACCATGATTCGAAGCAAGGGTTGAGAGAATTCATGGCAGAGATTTCGAGTATGGGGAGGCTTCAACACAAGAATTTGGTGCAAATGCGAGGCTGGTGCCGAAAGGGCAATGAATTGTTGCTTGTTTATGATTACATGCCTAATGGAAGCCTAAATAGATGGATATTCGATAAGCCAAAGACTATAATGGGCTGGGAATCTCGAAAGAGGGTTCTTGCCGATGTGGCCGAGGGTTTGAACTACCTTCACCATGGTTGGGACCAAGTGGTGGTTCATAGAGATGTGAAATCTAGTAATGTTTTGTTGGATCAAGAAATGAGAGGTAGGTTGGGGGATTTTGGGCTAGCAAAGTTGTACACGCACGGTGAGGTGCCGAACACAACAAGAGTGGTGGGGACGCTAGGGTACTTGGCGCCGGAGGTGGCAACAATGGCGGCTCCAACAGAGGCGAGTGATGTGTATAGCTTTGGGGTGGTGGTGTTGGAGGTGGCATGTGGGAGAAGGCCGATAGAGACGTGGGCTGCAGAGGAGGAGGTGGTGCTTATTGATTGGGTGAGGGGGAAGTATGGGGAAGGGAGGTTATGCGAGGCAGCAGATGAGAGGATTAAGGGAGAATACAAGGTGGAGGAGATGGAGGCTGTATTGAAGCTTGGGTTGGCTTGTTGTCACCCTGATCCACTTCACCGGCCCACCATGAGAGAGGTGGTGGCCATTTTGCTTGGGGAGGAGGCTGCAGCGGATCCTAGTGTTCTATTATCGGAATTGACAGAGGGAGGGGGTAGTCCAAGCGGCCATGGTGGTGGTGAAGCTTCCTTGCTTTAG

Network for GWHGAAZE030488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	21	262	7.60E-64
PF00069.26	Pkinase	336	601	1.40E-51

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030246	molecular_function	carbohydrate binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.881
	SRR3591706	second leaf	12.237
	SRR3591707	mature leaf	11.515
	SRR3591708	Shoot apex	13.348
	SRR3591709	Stem	23.088
	SRR3591710	White floral bud	10.717
	SRR3591711	White flower	12.970
	SRR3591712	Green floral bud	8.289
	SRR3591713	Yellow flower	9.112
SRP173429	SRR8316895	Juvenile bud stage	8.013
	SRR8316896	Juvenile bud stage	10.236
	SRR8316897	Juvenile bud stage	3.943
	SRR8316894	Third green stage	3.665
	SRR8316900	Third green stage	6.863
	SRR8316901	Third green stage	7.851
	SRR8316898	Complete white stage	4.171
	SRR8316899	Complete white stage	14.872
	SRR8316903	Complete white stage	7.227
	SRR8316902	Silver flowering stage	6.384
	SRR8316904	Silver flowering stage	9.373
	SRR8316905	Silver flowering stage	5.513
	SRR8316906	Gold flowering stage	26.625
	SRR8316907	Gold flowering stage	19.798
	SRR8316908	Gold flowering stage	26.214
SRP132670	SRR6706286	Control	11.527
	SRR6706287	Light intensity 50%	10.711
	SRR6706288	Light intensity 20%	9.847
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.481
	CNS0095593	Slightly white alabastrum(diploid) 2	7.442
	CNS0095594	Slightly white alabastrum(diploid) 3	7.140
	CNS0095595	Whole white alabastrum(diploid) 2	5.138
	CNS0095596	Whole white alabastrum(diploid) 3	2.897
	CNS0095597	Whole white alabastrum(diploid) 4	4.622
	CNS0095598	Silvery flower (diploied) 1	10.852
	CNS0095599	Silvery flower (diploied) 2	9.273
	CNS0095600	Silvery flower (diploied) 3	19.612
	CNS0095601	Golden flower (diploid) 1	15.482
	CNS0095602	Golden flower (diploid) 2	29.010
	CNS0095603	Golden flower (diploid) 3	28.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.327
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.893
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.241
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.470
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.362
	CNS0095610	Silvery flower (tetraploid) 1	17.980
	CNS0095611	Silvery flower (tetraploid) 2	14.257
	CNS0095612	Silvery flower (tetraploid) 3	17.915
	CNS0095613	Golden flower (tetraploid) 1	15.539
	CNS0095614	Golden flower (tetraploid) 2	25.032
	CNS0095615	Golden flower (tetraploid) 3	35.287
CRA001975	CRR073297	Stem 1	8.444
	CRR073298	Stem 2	8.583
	CRR073299	Stem 3	6.830
	CRR073300	Leaf 1	8.779
	CRR073301	Leaf 2	9.419
	CRR073302	Leaf 3	7.607
	CRR073303	Juvenile bud 1	7.228
	CRR073304	Juvenile bud 2	6.198
	CRR073305	Juvenile bud 3	13.763
	CRR073306	Third green 1	7.406
	CRR073307	Third green 2	5.888
	CRR073308	Third green 3	7.206
	CRR073309	Second white 1	6.950
	CRR073310	Second white 2	5.115
	CRR073311	Second white 3	3.204
	CRR073312	Silver flowering 1	8.838
	CRR073313	Silver flowering 2	8.705
	CRR073314	Silver flowering 3	5.695
	CRR073315	Gold flowering 1	8.043
	CRR073316	Gold flowering 2	9.397
	CRR073317	Gold flowering 3	8.849
	CRR073318	Tawny withering 1	13.972
	CRR073319	Tawny withering 2	8.802
	CRR073320	Tawny withering 3	10.779