Gene detail

Detail information of GWHGAAZE030476

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12714.1	0	unnamed protein product [Coffea canephora]
COG	YP_004180735.1	8E-22	serine/threonine protein kinase
Swissprot	tr\|Q9STK6\|WNK3_ARATH	0	Probable serine/threonine-protein kinase WNK3
trEMBL	tr\|A0A068UWV9\|A0A068UWV9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_70 {ECO:0000313\|EMBL:CDP12714.1}
TAIR10	AT3G48260.1	0	with no lysine (K) kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44179175	44183666	+
GWHAAZE00000009	mRNA	44179175	44183666	+
GWHAAZE00000009	exon	44179175	44179261	+
GWHAAZE00000009	exon	44179433	44179470	+
GWHAAZE00000009	exon	44179582	44179809	+
GWHAAZE00000009	exon	44179909	44180132	+
GWHAAZE00000009	exon	44180232	44180389	+
GWHAAZE00000009	exon	44182001	44182178	+
GWHAAZE00000009	exon	44182537	44182656	+
GWHAAZE00000009	exon	44182735	44183461	+
GWHAAZE00000009	exon	44183546	44183666	+
GWHAAZE00000009	CDS	44179175	44179261	+
GWHAAZE00000009	CDS	44179433	44179470	+
GWHAAZE00000009	CDS	44179582	44179809	+
GWHAAZE00000009	CDS	44179909	44180132	+
GWHAAZE00000009	CDS	44180232	44180389	+
GWHAAZE00000009	CDS	44182001	44182178	+
GWHAAZE00000009	CDS	44182537	44182656	+
GWHAAZE00000009	CDS	44182735	44183461	+
GWHAAZE00000009	CDS	44183546	44183666	+

Transcript Sequence
>GWHTAAZE030510 ATGCACCATGAGCCTTCCTCCGAACAAGAGCCCGATGATTCTGATGCTGAGTTTGTTGAGGTTGATCCCTCAGGTCGATATGGTCGGTATAAAGAAGTTCTAGGCAAGGGTGCATTCAAAAAAGTATATCGGGCATTTGATGAATTGGAAGGTATTGAAGTAGCTTGGAATCAAGTGAAGGTTGCAGATCTCTTACGAAATTCGGTTGACCTTGAACGTTTGTATTCCGAAGTTCATTTGCTTAAGACTCTTAAACACAAGAACATTATCAAATTTTACAACTCATGGATCGACAAGAAAAATGAGAACATCAACTTCATTACTGAGATTTTCACTTCTGGGACGTTAAGGCAGTACCGCAAGAAACATAAGCATGTTGATTTAAGAGCATTGAGGAAATGGTCAAGGCAGATCTTAGAAGGACTTTCCTATCTCCATAGTCACGACCCTCCAGTTATTCACCGGGATCTCAAATGCGACAATATATTTGTCAATGGCAATCAAGGCGAGGTAAAAATTGGTGACTTAGGCCTAGCTGCGATTCTTAGCCAAGCTCGTTCAGCTCATAGCGTCATTGGTACTCCGGAGTTTATGGCACCAGAACTTTATGAGGAGGAGTACAATGAACTTGTAGATATTTATGCTTTCGGCATGTGCTTGCTGGAGTTGGTGACCTTTGAATACCCATACATTGAATGCTCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATCAAACCAGCCTCATTAATGAAAGTGAAAGATCCTGGAGTCAGGGCATTTATAGAAAAGTGTATTGCAAATGTCTCCGATCGATTGCCTGCTAAGGAACTATTGATGGATCCTTTTCTCCAGTCATATGAGACTAATGGGAGTCAGCCCTTGCAACCTAGTTGTCCACATGCAGTTGATAATGGCAAAGCGCCGGAGTACTCGGTTCCTGAGACAAGCAGAGACTTCACAGTGCAGGGTCAGAGGAAAGACCTCAACACAATATTTTTAAAGCTACGAATAACTGATTCCACAGGTCATATCCGAAATATCCACTTCCCATTTGATATCGACATTGATACATCAAATGGTGTAGCTAGTGAAATGGTTGAAGAGCTGGACCTGACAGATCAAGATGTTTCAGCCATTGCTGTGATGATTGACACCGAAATTAAGGCCTATATTCCTGATTGGGCACCCAGAGACCTTGGCATTGTTGATGGTGAAGTTGTTATTTCTGATGGCTGCAGTTTTGAACCCCATGATGATGCTTCTCCTTCAAATGACTCTGCTGCCCCTGCGGGTAGTCTTGTTCTTGAGCTATTGCCTTCTGGTAGAAAATATTGGTCCGATTCACCCAAAGCTGGCAGTGGAAGTTCCCCGTTTAGACCCAAACCTTCGAACTTGTTTCAGGAAGATTCAGTCACCTCTGGATTTAGCTCGACTGAAGAAAATGAGCCATCACCGGATATTTCAGATCTACGTTACACCAACGGACCTCAGTCACTGCGAGACGATGATCGTGATGAAGTCAAAATCATAGTGGAAAAACTCGAGCTTCTACTAGTTGATCAGCAAAGAGAGCTAGATGAGTTAAAGAAACAGCATGAATTGAATGTATTGGATCTTTTGAAGGAACTTCCTTCTGAAGTTCGTGGTAAAGTTGTGAGAACCTGTAATGCGAAGATGTCTGACTATGAAATGCACTGTGACACATGTTGCTTCAGTGAGAACTCTACTGATATGGGCTCCGTTTTGCAGATAAAGCAGGAATCTGTACCCAAAAATCTCATCGTTGGACCAATATTCAGGTACAAGTTTGATACTGTGAAGTGGAAAATCAAGTCTGGCATGGGTATTGCCATAATTTTGAGGGAGGGATAA

Network for GWHGAAZE030476

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	31	286	1.20E-49
PF12202.9	OSR1_C	336	390	3.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.732
	SRR3591706	second leaf	9.492
	SRR3591707	mature leaf	10.141
	SRR3591708	Shoot apex	16.489
	SRR3591709	Stem	28.868
	SRR3591710	White floral bud	49.091
	SRR3591711	White flower	25.490
	SRR3591712	Green floral bud	50.764
	SRR3591713	Yellow flower	24.491
SRP173429	SRR8316895	Juvenile bud stage	15.325
	SRR8316896	Juvenile bud stage	34.656
	SRR8316897	Juvenile bud stage	15.421
	SRR8316894	Third green stage	15.650
	SRR8316900	Third green stage	47.858
	SRR8316901	Third green stage	43.517
	SRR8316898	Complete white stage	5.229
	SRR8316899	Complete white stage	14.994
	SRR8316903	Complete white stage	9.817
	SRR8316902	Silver flowering stage	6.682
	SRR8316904	Silver flowering stage	11.942
	SRR8316905	Silver flowering stage	4.422
	SRR8316906	Gold flowering stage	16.719
	SRR8316907	Gold flowering stage	14.031
	SRR8316908	Gold flowering stage	15.481
SRP132670	SRR6706286	Control	18.968
	SRR6706287	Light intensity 50%	20.125
	SRR6706288	Light intensity 20%	18.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.329
	CNS0095593	Slightly white alabastrum(diploid) 2	33.875
	CNS0095594	Slightly white alabastrum(diploid) 3	46.780
	CNS0095595	Whole white alabastrum(diploid) 2	73.189
	CNS0095596	Whole white alabastrum(diploid) 3	82.706
	CNS0095597	Whole white alabastrum(diploid) 4	90.179
	CNS0095598	Silvery flower (diploied) 1	10.931
	CNS0095599	Silvery flower (diploied) 2	12.702
	CNS0095600	Silvery flower (diploied) 3	18.765
	CNS0095601	Golden flower (diploid) 1	13.373
	CNS0095602	Golden flower (diploid) 2	21.185
	CNS0095603	Golden flower (diploid) 3	18.339
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.078
	CNS0095605	Slightly white alabastrum(tetraploid) 2	67.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.531
	CNS0095607	Whole white alabastrum(tetraploid) 1	88.667
	CNS0095608	Whole white alabastrum(tetraploid) 2	89.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.508
	CNS0095610	Silvery flower (tetraploid) 1	15.967
	CNS0095611	Silvery flower (tetraploid) 2	25.653
	CNS0095612	Silvery flower (tetraploid) 3	22.517
	CNS0095613	Golden flower (tetraploid) 1	9.841
	CNS0095614	Golden flower (tetraploid) 2	16.885
	CNS0095615	Golden flower (tetraploid) 3	21.168
CRA001975	CRR073297	Stem 1	30.785
	CRR073298	Stem 2	25.637
	CRR073299	Stem 3	19.269
	CRR073300	Leaf 1	47.554
	CRR073301	Leaf 2	35.081
	CRR073302	Leaf 3	17.609
	CRR073303	Juvenile bud 1	30.448
	CRR073304	Juvenile bud 2	18.148
	CRR073305	Juvenile bud 3	13.056
	CRR073306	Third green 1	11.257
	CRR073307	Third green 2	10.723
	CRR073308	Third green 3	10.787
	CRR073309	Second white 1	5.514
	CRR073310	Second white 2	10.654
	CRR073311	Second white 3	10.140
	CRR073312	Silver flowering 1	14.448
	CRR073313	Silver flowering 2	14.082
	CRR073314	Silver flowering 3	11.559
	CRR073315	Gold flowering 1	11.358
	CRR073316	Gold flowering 2	10.651
	CRR073317	Gold flowering 3	4.801
	CRR073318	Tawny withering 1	22.712
	CRR073319	Tawny withering 2	17.968
	CRR073320	Tawny withering 3	17.660