Gene detail

Detail information of GWHGAAZE030474

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12704.1	0	unnamed protein product [Coffea canephora]
COG	YP_008147087.1	4E-16	hypothetical protein SCE1572_03120
Swissprot	tr\|P51567\|AFC2_ARATH	0	Serine/threonine-protein kinase AFC2
trEMBL	tr\|A0A068UWV2\|A0A068UWV2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_70 {ECO:0000313\|EMBL:CDP12704.1}
TAIR10	AT4G24740.1	0	FUS3-complementing gene 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44165792	44169996	+
GWHAAZE00000009	mRNA	44165792	44169996	+
GWHAAZE00000009	exon	44165792	44165983	+
GWHAAZE00000009	exon	44167355	44167544	+
GWHAAZE00000009	exon	44167947	44167973	+
GWHAAZE00000009	exon	44168067	44168220	+
GWHAAZE00000009	exon	44168329	44168377	+
GWHAAZE00000009	exon	44168475	44168589	+
GWHAAZE00000009	exon	44168815	44168906	+
GWHAAZE00000009	exon	44169010	44169166	+
GWHAAZE00000009	exon	44169254	44169318	+
GWHAAZE00000009	exon	44169432	44169529	+
GWHAAZE00000009	exon	44169627	44169729	+
GWHAAZE00000009	exon	44169847	44169996	+
GWHAAZE00000009	CDS	44165792	44165983	+
GWHAAZE00000009	CDS	44167355	44167544	+
GWHAAZE00000009	CDS	44167947	44167973	+
GWHAAZE00000009	CDS	44168067	44168220	+
GWHAAZE00000009	CDS	44168329	44168377	+
GWHAAZE00000009	CDS	44168475	44168589	+
GWHAAZE00000009	CDS	44168815	44168906	+
GWHAAZE00000009	CDS	44169010	44169166	+
GWHAAZE00000009	CDS	44169254	44169318	+
GWHAAZE00000009	CDS	44169432	44169529	+
GWHAAZE00000009	CDS	44169627	44169729	+
GWHAAZE00000009	CDS	44169847	44169996	+

Transcript Sequence
>GWHTAAZE030508 ATGGAGACGGAGCGTGTAACTGAGTTTCCACACACGCATATGGACCGGCGCCCAAGGAAGAGGCCGCGTTTGGGTTGGGATGTTGTTCCTCAGGCCCCTAAGGTATCAGATCTGTTCTTTCTAAACTCAGATCTTATTCTATTTCTTGATTTTTATGCTTTTGCTTTGCTAGATCTGATCCGATTTCTTCAGGCTCAGCTAGGATTGTTTTATGGACAAGAGGTTGGAAATGTGACGAGCTTTGCATCTTCGAGGGCACCCTCAGACCATACTAGTTCTCTATTTGTTAAGGAAGTGGCTCGAAATGGTTCTCCCCCGTGGCGAGAAGATGACAAAGACGGGCATTATATGTTTGCGATTGGAGATAATTTAACCTCTCGCTACAAAATCCACAGCAAGATGGGTGAAGGCACTTTTGGCCGGGTGCTAGAATGCTGGGACAAGGAAAGGAAAGAAATGGTTGCCATTAAAATTGTACGTGGGATTAAGAAGTACCGTGAGGCTGCTATGATTGAAGTTGATGTACTGCAACAACTTGGTAAACAAGATAAAGGTGGCAATCGTTGTGTGCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTCTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGAAGACAACTGTTGGAATGTGTAGCATTCATGCATGAAATGCGCCTCATACACACTGATTTGAAGCCTGAAAACATATTGCTTGTGTCTCCGGATTATGTTAAAGTTCCAGATTATAAGGGTTCATCACGGTCTCCAAAGGACAGTTCTTACTGTAAAAGAGTTCCAAAATCCAGTGCGATCAAGGTTATTGATTTCGGTAGCACGACTTATGACCGTCTAGATCAGACCTACATAGTATCAACACGACATTATCGTGCGCCGGAGGTTATTTTAGGACTCGGGTGGAGTTACCCTTGTGATGTATGGAGTGTTGGATGCATCCTTGTGGAACTTTGTTCTGGTGAAGCACTGTTCCAAACACACGAGAATTTGGAACACCTTGCCATGATGGAGAGAGTCCTAGGTCCACTGCCCCAACACATGTTGAAGAGAGTAGATCGGCATGCTGAGAAGTATGTGAGAAAGGGTAGGCTGGATTGGCCAGAGGGCGCTGCATCCAGAGAAAGTATTAAAGCTGTATTGAAGTTACCTCGCCTCCAGAACTTGATCATGCAGCATGTGGACCATTCAGCAGGGGATCTAATACATCTATTACAGGGACTTCTGAAATATGACCCTTCAGAAAGGTTAATGGCACGGGATGCCCTCAAGCATTCCTTCTTCACCCGTGATCATCTTAGAAGGTCATGA

Network for GWHGAAZE030474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	128	455	1.40E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CLK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	145.020
	SRR3591706	second leaf	136.964
	SRR3591707	mature leaf	144.142
	SRR3591708	Shoot apex	143.189
	SRR3591709	Stem	181.375
	SRR3591710	White floral bud	173.626
	SRR3591711	White flower	176.303
	SRR3591712	Green floral bud	128.158
	SRR3591713	Yellow flower	186.336
SRP173429	SRR8316895	Juvenile bud stage	46.580
	SRR8316896	Juvenile bud stage	53.433
	SRR8316897	Juvenile bud stage	28.310
	SRR8316894	Third green stage	53.365
	SRR8316900	Third green stage	141.794
	SRR8316901	Third green stage	106.681
	SRR8316898	Complete white stage	91.842
	SRR8316899	Complete white stage	241.645
	SRR8316903	Complete white stage	150.782
	SRR8316902	Silver flowering stage	91.121
	SRR8316904	Silver flowering stage	114.266
	SRR8316905	Silver flowering stage	53.384
	SRR8316906	Gold flowering stage	168.018
	SRR8316907	Gold flowering stage	163.146
	SRR8316908	Gold flowering stage	174.582
SRP132670	SRR6706286	Control	122.489
	SRR6706287	Light intensity 50%	127.826
	SRR6706288	Light intensity 20%	144.914
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	101.257
	CNS0095593	Slightly white alabastrum(diploid) 2	116.733
	CNS0095594	Slightly white alabastrum(diploid) 3	84.968
	CNS0095595	Whole white alabastrum(diploid) 2	90.089
	CNS0095596	Whole white alabastrum(diploid) 3	82.329
	CNS0095597	Whole white alabastrum(diploid) 4	90.024
	CNS0095598	Silvery flower (diploied) 1	146.404
	CNS0095599	Silvery flower (diploied) 2	79.800
	CNS0095600	Silvery flower (diploied) 3	113.289
	CNS0095601	Golden flower (diploid) 1	83.733
	CNS0095602	Golden flower (diploid) 2	103.524
	CNS0095603	Golden flower (diploid) 3	95.203
	CNS0095604	Slightly white alabastrum(tetraploid) 1	127.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	109.981
	CNS0095606	Slightly white alabastrum(tetraploid) 3	197.570
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	71.262
	CNS0095609	Whole white alabastrum(tetraploid) 3	124.450
	CNS0095610	Silvery flower (tetraploid) 1	167.506
	CNS0095611	Silvery flower (tetraploid) 2	128.387
	CNS0095612	Silvery flower (tetraploid) 3	154.092
	CNS0095613	Golden flower (tetraploid) 1	143.938
	CNS0095614	Golden flower (tetraploid) 2	148.734
	CNS0095615	Golden flower (tetraploid) 3	119.034
CRA001975	CRR073297	Stem 1	117.447
	CRR073298	Stem 2	105.796
	CRR073299	Stem 3	51.242
	CRR073300	Leaf 1	132.467
	CRR073301	Leaf 2	132.171
	CRR073302	Leaf 3	55.784
	CRR073303	Juvenile bud 1	61.388
	CRR073304	Juvenile bud 2	40.466
	CRR073305	Juvenile bud 3	77.817
	CRR073306	Third green 1	46.825
	CRR073307	Third green 2	39.417
	CRR073308	Third green 3	43.168
	CRR073309	Second white 1	39.035
	CRR073310	Second white 2	37.882
	CRR073311	Second white 3	38.213
	CRR073312	Silver flowering 1	48.540
	CRR073313	Silver flowering 2	54.883
	CRR073314	Silver flowering 3	54.027
	CRR073315	Gold flowering 1	58.645
	CRR073316	Gold flowering 2	81.767
	CRR073317	Gold flowering 3	23.824
	CRR073318	Tawny withering 1	67.084
	CRR073319	Tawny withering 2	90.959
	CRR073320	Tawny withering 3	50.751