Gene detail

Detail information of GWHGAAZE030455

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP31375.1	0	hypothetical protein JCGZ_11751 [Jatropha curcas]
COG	YP_004596549.1	8E-17	alpha-1,4-glucan-protein synthase
Swissprot	tr\|O04300\|UPTG_PEA	0	Alpha-1,4-glucan-protein synthase [UDP-forming]
trEMBL	tr\|A0A067KGI6\|A0A067KGI6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP31375.1}
TAIR10	AT3G08900.1	0	reversibly glycosylated polypeptide 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43879672	43882493	-
GWHAAZE00000009	mRNA	43879672	43882493	-
GWHAAZE00000009	exon	43882170	43882493	-
GWHAAZE00000009	exon	43880939	43881189	-
GWHAAZE00000009	exon	43880688	43880856	-
GWHAAZE00000009	exon	43879672	43880234	-
GWHAAZE00000009	CDS	43882170	43882493	-
GWHAAZE00000009	CDS	43880939	43881189	-
GWHAAZE00000009	CDS	43880688	43880856	-
GWHAAZE00000009	CDS	43879893	43880234	-
GWHAAZE00000009	three_prime_UTR	43879672	43879892	-

Transcript Sequence
>GWHTAAZE030489 ATGGCCAATTCCTCCCCATCTCCAGTTCCCCTCCTGAAAGACGAACTCGACATAGTAATACCCACAATTCGAAACCTCGATTTCCTAGAGATGTGGAGGCCTTTCTTTCAACACTACCATCTCATAATCGTACAAGACGGTGACCCATCGAAGACCATCAAGGTCCCCGAAGGATTCGATTACGAGCTCTATAATCGCAACGATATCAATCGGATTCTTGGTCCCAAGGCAAACTGCATTTCCTTTAAGGACTCTGCTTGTCGTTGCTTCGGATATATGGTCTCTAAGAAGAAGTACATCTTCACCATTGATGATGATTGCTTCGTTGCCAAAGATCCATCCGGCAAAGAAATAAATGCACTCGAACAGCACATAAAGAATTTGCTTTCCCCATCAACCCCGTTTTTCTTCAACACCCTGTACGATCCATACAGGGATGGTGCAGATTTCGTCCGTGGATACCCGTTCAGTCTTCGTGAGGGTGTTCCCACTGCAGTTTCTCACGGGCTTTGGCTCAACATCCCAGATTACGATGCACCCACTCAGCTTGTCAAGCCTCGTGAGAGAAACACTAGGTTTGTGGATGCGGTTATGACCATACCGAAGGGGACCCTCTTCCCCATGTGTGGTATGAATCTTGGGTTCAACCGCGAATTGATCGGCCCTGCAATGTACTTTGGACTCATGGGCGATGGCCAGCCAATTGGGCGCTACGATGACATGTGGGCTGGTTGGTGCACCAAGGTGATATGTGACCACTTGGGATTGGGAATCAAGACAGGGTTACCGTACATTTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAAGAATACAAAGGGATCTACTGGCAAGAAGAGCTGATCCCATTTTTCCAAGCTGTAGTCCTTCCAAAGGAGTGCACCACAGTGCAAAAATGCTACATTGAGCTCTCAAAGCAAGTTAGGGCAAAGCTTGGTAAGGTTGATGACTACTTCCTCAAGCTGGCTGATGCCATGGTCACCTGGATCGACGCTTGGGATGAGCTCAACCCGTCTAATGGAGAGCCCGCAAAACTACCTAACGGTGCTGGAAAATAGAGTAAATTCGGTTATAATTATTTATCGCCTTATGAGAGATTTAGGGTTGTATCGAGATCATCCTTTTTGATTGAGATTTGCTTAGAAGCATGAAGTTTTTATTTTTGCAGCTATGGAGGTTTAATAGTTTATTTACTTTTTATCTTCTTTGAGTTTAGAACATTGATATGTTATGAAATTTATTATAAATGATACTGAGCGAGGAATACATACTTTCTAGT

Network for GWHGAAZE030455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03214.14	RGP	12	346	2.00E-178

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13379	RGP, UTM	Metabolic pathways	map01100
K13379	RGP, UTM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0071669	biological_process	plant-type cell wall organization or biogenesis
GO:0016866	molecular_function	intramolecular transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.435
	SRR3591706	second leaf	42.172
	SRR3591707	mature leaf	15.925
	SRR3591708	Shoot apex	71.585
	SRR3591709	Stem	40.785
	SRR3591710	White floral bud	16.449
	SRR3591711	White flower	37.096
	SRR3591712	Green floral bud	42.862
	SRR3591713	Yellow flower	12.940
SRP173429	SRR8316895	Juvenile bud stage	36.899
	SRR8316896	Juvenile bud stage	36.381
	SRR8316897	Juvenile bud stage	22.324
	SRR8316894	Third green stage	20.151
	SRR8316900	Third green stage	51.486
	SRR8316901	Third green stage	52.131
	SRR8316898	Complete white stage	3.138
	SRR8316899	Complete white stage	36.178
	SRR8316903	Complete white stage	8.741
	SRR8316902	Silver flowering stage	4.069
	SRR8316904	Silver flowering stage	5.396
	SRR8316905	Silver flowering stage	1.110
	SRR8316906	Gold flowering stage	9.815
	SRR8316907	Gold flowering stage	5.650
	SRR8316908	Gold flowering stage	15.460
SRP132670	SRR6706286	Control	52.507
	SRR6706287	Light intensity 50%	56.541
	SRR6706288	Light intensity 20%	64.554
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.775
	CNS0095593	Slightly white alabastrum(diploid) 2	81.533
	CNS0095594	Slightly white alabastrum(diploid) 3	42.411
	CNS0095595	Whole white alabastrum(diploid) 2	59.347
	CNS0095596	Whole white alabastrum(diploid) 3	58.095
	CNS0095597	Whole white alabastrum(diploid) 4	41.625
	CNS0095598	Silvery flower (diploied) 1	26.233
	CNS0095599	Silvery flower (diploied) 2	38.064
	CNS0095600	Silvery flower (diploied) 3	13.857
	CNS0095601	Golden flower (diploid) 1	20.630
	CNS0095602	Golden flower (diploid) 2	16.161
	CNS0095603	Golden flower (diploid) 3	14.906
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.085
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.319
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.954
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.619
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.457
	CNS0095610	Silvery flower (tetraploid) 1	5.785
	CNS0095611	Silvery flower (tetraploid) 2	4.428
	CNS0095612	Silvery flower (tetraploid) 3	4.245
	CNS0095613	Golden flower (tetraploid) 1	1.978
	CNS0095614	Golden flower (tetraploid) 2	8.509
	CNS0095615	Golden flower (tetraploid) 3	1.040
CRA001975	CRR073297	Stem 1	63.554
	CRR073298	Stem 2	64.400
	CRR073299	Stem 3	68.095
	CRR073300	Leaf 1	69.078
	CRR073301	Leaf 2	92.637
	CRR073302	Leaf 3	86.531
	CRR073303	Juvenile bud 1	79.586
	CRR073304	Juvenile bud 2	41.341
	CRR073305	Juvenile bud 3	67.964
	CRR073306	Third green 1	2.951
	CRR073307	Third green 2	3.452
	CRR073308	Third green 3	3.417
	CRR073309	Second white 1	7.532
	CRR073310	Second white 2	7.665
	CRR073311	Second white 3	1.771
	CRR073312	Silver flowering 1	7.446
	CRR073313	Silver flowering 2	9.787
	CRR073314	Silver flowering 3	13.350
	CRR073315	Gold flowering 1	10.400
	CRR073316	Gold flowering 2	19.081
	CRR073317	Gold flowering 3	18.278
	CRR073318	Tawny withering 1	90.800
	CRR073319	Tawny withering 2	76.832
	CRR073320	Tawny withering 3	78.044