Gene detail

Detail information of GWHGAAZE030442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273302.1	4.9255E-137	PREDICTED: autophagy-related protein 36 [Vitis vinifera]
Swissprot	tr\|Q9SGH2\|MBD9_ARATH	0.00000003	Methyl-CpG-binding domain-containing protein 9
trEMBL	tr\|D7SIQ0\|D7SIQ0_VITVI	2E-137	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15361.3}
TAIR10	AT3G05670.1	7E-21	RING/U-box protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43712440	43717008	+
GWHAAZE00000009	mRNA	43712440	43717008	+
GWHAAZE00000009	exon	43712440	43712580	+
GWHAAZE00000009	exon	43712655	43712765	+
GWHAAZE00000009	exon	43715163	43716465	+
GWHAAZE00000009	exon	43716626	43717008	+
GWHAAZE00000009	CDS	43712440	43712580	+
GWHAAZE00000009	CDS	43712655	43712765	+
GWHAAZE00000009	CDS	43715163	43716465	+
GWHAAZE00000009	CDS	43716626	43716873	+
GWHAAZE00000009	three_prime_UTR	43716874	43717008	+

Transcript Sequence
>GWHTAAZE030476 ATGGAAACCCTAGAGGACCAAGTAATTACCCCAACCCTAGCTGCATCTTCTTTATCCTCCAAAGGCAAATCCAAAATGGAAGAAGTGTCAATTGCGGATACCGAGGTTCAACTAGCTGTGGGATATGTTTATCGGAAGAGGGTCGAGTCTCGTTGCCCCATGTGCAAGCGCCGCTTCTCCTCTATTCGCCGCCCTCTAAAGGACACTGTTTTTCCCTCTGAGCGGATCGTCAATGTCCCCGTTCGCGACCAGGTCTACCATTTTTTTGGTAATTCAACAATGGGACCTCCCAATCCATATTCAGAAGTTAAATGCAGTGTGTGCCACGGTGTACAAGACGAAAATCTTTTGCTGTTATGTGATCTTTGTGACTCTGCTGTGCATACGTTCTGTGTAGGTCTGGGTGCCACTGTCCCAGAGGGTGATTGGTTTTGCCAAGACTGTACTATCTTGAAAGAGGAACAAGCCAAGAGTGAAACAGATCATGATGGACATGTATCTATCATTGACATTGTCCGAGAACCCAAGCTTAATTCTCTTAGTAGATCTCCAATAATCTCTTTGGATCGAAGATGGTGGTCAACTCCCGTTGTTCCAGATGGAGAAATAAGTGAAGTTAGTGCGGTAGAGAATGTGGCTGCCCAGGCTTCAGGAACAGAGCCAGCTGGACACAGTGCTACTCAGTCTGGTGCAAGAACGTTGAAACGTTGCCGGAATGTTCATGGCCGTATACAAGCATTACGTGAAAATTGGAATTCTTTTCGAAGCGGGTTGATGAGCTTCCCCTCTGGCTCGGTTAATAGGCCTCATATGGGTGCTATACTTTGTAGTGGATCTAGTCAACCAAATTCGTCATCTTGCTCAGGCCAGCAATTGACAGCTGAAAAATGTTCTTCTTCCTCTGTTAAATTACACGGTAGAAGCACAAATGACATTGACAAAGCTTGGAAAATGTTGAATGCCGCGAAGTCGATAGGTTGTGGACCCTCAAGGGAAGTTAATGTCCCAAAAGATGCTGGTAACATGAGCACAAAGCTTATTGCATCAAATAACAAAAAACGTGCAAGTGAAGATCACATGTGCTTCAGATCAAAGAAACATAACCACTATTCCTTCCTTGAAAAGGACAGAGATGATCATAAATATGGTATATTTGAGAAACAAAAACAGAGTGGGATTTCTGCGAAGGGAGTTCAAAAATTATTCGAGGGTTTTCAAACTACGTTTTCACCAGTATATTGTGAGTTGGCATCTTCTAGGAAGGACCAGACTTCAGTTCAAGTTGATATTTCCCATGGAAATGTTAGGGACCCACCTAAGGGGAATTCTGTTGGAGCAACGTTGAATGTTTTAGTTGAGAATGATGGCCCCGCTTCAAAAATTTCTCATGCTGACCAAGACCACCTTGCATCTTGGCAAGCTCAACTACATATGAAGTGTAGGACAGAAAACAGTTGTGGTGGTAGCAAGGCCATCAGTGCTGATAATGCCAAGAGTGAGATTCAGTCTCTCGTCAAGCTCAACTTAAAGCTTCTAAGCAAAGATAAAAAGCTAGAAGTAGATGTATTTAAGGAAGTTGCGAGGCTTTCCACACATTCCATCTTGGCTGCATGTGGTTTGGAGTGCCCGAAGCGTGGGGTCCGCTCCTTTCGCTGCTCAGTTTGCTGTCATGTCAATGAAGGTCAGCAAATCCGGAGGTCCACCCTAATGCCTAGTTCTTGCAGAGAATGTTTTTTTGTCTTTGTTAAGGATGTTGTCAGCACCATCATGTTTGAGAAACTTTGGCAATATCGTAATTCCTAGATGAATCTTTTTTTATGGGTAAATATCGAATAACTGCAGAGATATCCCAGTCAACTATAAGATATCCTTTTGGTTTTGCCTTCACTACATTGGAAGTAGGTTGGCTTGGCTTCTCTCGGGTAACAATTAGTACTG

Network for GWHGAAZE030442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	105	149	4.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.810
	SRR3591706	second leaf	8.419
	SRR3591707	mature leaf	7.898
	SRR3591708	Shoot apex	15.271
	SRR3591709	Stem	12.082
	SRR3591710	White floral bud	10.024
	SRR3591711	White flower	12.772
	SRR3591712	Green floral bud	11.654
	SRR3591713	Yellow flower	6.781
SRP173429	SRR8316895	Juvenile bud stage	7.014
	SRR8316896	Juvenile bud stage	11.925
	SRR8316897	Juvenile bud stage	5.868
	SRR8316894	Third green stage	4.472
	SRR8316900	Third green stage	13.510
	SRR8316901	Third green stage	12.551
	SRR8316898	Complete white stage	3.715
	SRR8316899	Complete white stage	16.978
	SRR8316903	Complete white stage	6.569
	SRR8316902	Silver flowering stage	3.141
	SRR8316904	Silver flowering stage	5.020
	SRR8316905	Silver flowering stage	1.913
	SRR8316906	Gold flowering stage	7.976
	SRR8316907	Gold flowering stage	5.137
	SRR8316908	Gold flowering stage	8.095
SRP132670	SRR6706286	Control	6.451
	SRR6706287	Light intensity 50%	7.325
	SRR6706288	Light intensity 20%	7.270
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.730
	CNS0095593	Slightly white alabastrum(diploid) 2	12.139
	CNS0095594	Slightly white alabastrum(diploid) 3	13.730
	CNS0095595	Whole white alabastrum(diploid) 2	11.988
	CNS0095596	Whole white alabastrum(diploid) 3	12.291
	CNS0095597	Whole white alabastrum(diploid) 4	13.777
	CNS0095598	Silvery flower (diploied) 1	13.836
	CNS0095599	Silvery flower (diploied) 2	12.035
	CNS0095600	Silvery flower (diploied) 3	11.602
	CNS0095601	Golden flower (diploid) 1	16.287
	CNS0095602	Golden flower (diploid) 2	16.392
	CNS0095603	Golden flower (diploid) 3	15.764
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.229
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.246
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.552
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.152
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.564
	CNS0095610	Silvery flower (tetraploid) 1	10.520
	CNS0095611	Silvery flower (tetraploid) 2	15.654
	CNS0095612	Silvery flower (tetraploid) 3	8.508
	CNS0095613	Golden flower (tetraploid) 1	5.969
	CNS0095614	Golden flower (tetraploid) 2	10.547
	CNS0095615	Golden flower (tetraploid) 3	6.334
CRA001975	CRR073297	Stem 1	18.734
	CRR073298	Stem 2	19.909
	CRR073299	Stem 3	19.629
	CRR073300	Leaf 1	20.383
	CRR073301	Leaf 2	16.575
	CRR073302	Leaf 3	18.836
	CRR073303	Juvenile bud 1	17.542
	CRR073304	Juvenile bud 2	12.498
	CRR073305	Juvenile bud 3	21.148
	CRR073306	Third green 1	3.534
	CRR073307	Third green 2	2.537
	CRR073308	Third green 3	4.191
	CRR073309	Second white 1	3.185
	CRR073310	Second white 2	1.869
	CRR073311	Second white 3	3.403
	CRR073312	Silver flowering 1	2.022
	CRR073313	Silver flowering 2	2.237
	CRR073314	Silver flowering 3	1.399
	CRR073315	Gold flowering 1	9.803
	CRR073316	Gold flowering 2	11.857
	CRR073317	Gold flowering 3	10.640
	CRR073318	Tawny withering 1	13.948
	CRR073319	Tawny withering 2	10.713
	CRR073320	Tawny withering 3	11.551