Detail information of GWHGAAZE030441


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273441.11.32586E-81PREDICTED: uncharacterized protein LOC100268065 [Vitis vinifera]
Swissprottr|P0CH30|RING1_GOSHI2E-28E3 ubiquitin-protein ligase RING1
trEMBLtr|F6GTF6|F6GTF6_VITVI5E-82Putative uncharacterized protein {ECO:0000313|EMBL:CCB43165.1}
TAIR10AT5G08139.16E-32RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4368278643683634-
GWHAAZE00000009mRNA4368278643683634-
GWHAAZE00000009exon4368330943683634-
GWHAAZE00000009exon4368278643683158-
GWHAAZE00000009CDS4368330943683634-
GWHAAZE00000009CDS4368278643683158-
Transcript Sequence

Network for GWHGAAZE030441

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21692101.80E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE030441.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.022
SRR3591706second leaf15.111
SRR3591707mature leaf18.158
SRR3591708Shoot apex22.167
SRR3591709Stem19.968
SRR3591710White floral bud23.173
SRR3591711White flower25.024
SRR3591712Green floral bud30.125
SRR3591713Yellow flower14.571
SRP173429 SRR8316895Juvenile bud stage 13.572
SRR8316896Juvenile bud stage 17.649
SRR8316897Juvenile bud stage 6.493
SRR8316894Third green stage 7.789
SRR8316900Third green stage 24.237
SRR8316901Third green stage 26.028
SRR8316898Complete white stage 8.553
SRR8316899Complete white stage 38.485
SRR8316903Complete white stage 15.413
SRR8316902Silver flowering stage11.055
SRR8316904Silver flowering stage9.479
SRR8316905Silver flowering stage5.787
SRR8316906Gold flowering stage 16.276
SRR8316907Gold flowering stage 17.990
SRR8316908Gold flowering stage 17.993
SRP132670SRR6706286Control22.444
SRR6706287Light intensity 50%26.223
SRR6706288Light intensity 20%27.109
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.843
CNS0095593Slightly white alabastrum(diploid) 218.725
CNS0095594Slightly white alabastrum(diploid) 315.688
CNS0095595Whole white alabastrum(diploid) 224.287
CNS0095596Whole white alabastrum(diploid) 318.202
CNS0095597Whole white alabastrum(diploid) 421.835
CNS0095598Silvery flower (diploied) 121.013
CNS0095599Silvery flower (diploied) 216.984
CNS0095600Silvery flower (diploied) 317.194
CNS0095601Golden flower (diploid) 120.747
CNS0095602Golden flower (diploid) 218.111
CNS0095603Golden flower (diploid) 318.828
CNS0095604Slightly white alabastrum(tetraploid) 120.143
CNS0095605Slightly white alabastrum(tetraploid) 219.725
CNS0095606Slightly white alabastrum(tetraploid) 331.192
CNS0095607Whole white alabastrum(tetraploid) 118.654
CNS0095608Whole white alabastrum(tetraploid) 217.999
CNS0095609Whole white alabastrum(tetraploid) 323.105
CNS0095610Silvery flower (tetraploid) 117.433
CNS0095611Silvery flower (tetraploid) 212.157
CNS0095612Silvery flower (tetraploid) 315.195
CNS0095613Golden flower (tetraploid) 111.201
CNS0095614Golden flower (tetraploid) 216.010
CNS0095615Golden flower (tetraploid) 313.008
CRA001975CRR073297Stem 127.398
CRR073298Stem 226.877
CRR073299Stem 328.799
CRR073300Leaf 132.234
CRR073301Leaf 226.113
CRR073302Leaf 324.635
CRR073303Juvenile bud 127.598
CRR073304Juvenile bud 222.220
CRR073305Juvenile bud 330.911
CRR073306Third green 116.092
CRR073307Third green 218.824
CRR073308Third green 316.704
CRR073309Second white 17.086
CRR073310Second white 213.282
CRR073311Second white 39.372
CRR073312Silver flowering 17.464
CRR073313Silver flowering 28.659
CRR073314Silver flowering 310.717
CRR073315Gold flowering 112.826
CRR073316Gold flowering 210.649
CRR073317Gold flowering 38.815
CRR073318Tawny withering 131.306
CRR073319Tawny withering 222.309
CRR073320Tawny withering 323.785