Gene detail

Detail information of GWHGAAZE030413

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009610370.1	6.91601E-87	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Nicotiana tomentosiformis]
COG	YP_006983790.1	1E-10	single-strand DNA binding protein
Swissprot	tr\|Q84J78\|SSBP_ARATH	2E-25	Single-stranded DNA-binding protein, mitochondrial (Precursor)
trEMBL	tr\|K4DEI6\|K4DEI6_SOLLC	5E-85	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g038370.1.1}
TAIR10	AT3G18580.1	2E-55	Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43276755	43279579	+
GWHAAZE00000009	mRNA	43276755	43279579	+
GWHAAZE00000009	exon	43276755	43277030	+
GWHAAZE00000009	exon	43277642	43277868	+
GWHAAZE00000009	exon	43279366	43279579	+
GWHAAZE00000009	CDS	43276755	43277030	+
GWHAAZE00000009	CDS	43277642	43277868	+
GWHAAZE00000009	CDS	43279366	43279579	+

Transcript Sequence
>GWHTAAZE030447 CAAAGAAGAGAGAGTAGTAGCAGCAAAGCCATTCCAATTTCAATGGCGTACTCCCTCTCGAGAAGACTATACCGTTCCATTCTCTCAAACCCTAGAACACCCTATAATAACCTATCATCCATCCCCTTCTCTAAAAAATTCTCTTCCTCCCACTCGGACGATACCGAGCCCGAGCCCGAGCCCGAATCCCACTCACTCCCTTCCTCACAATCAACTCAGCAACGTCCCTTCACCGACCGGCCCCTCGAAAACGGCTTAGATGTAGGCATTTACAAGGCAATAATAGTGGGGCAGGTGGGGCAAAGTCCGATACAGAAGAGGCTGAAGAGTGGGAGGATGGTGACTTTGCTATCAGTGGGGACTGGTGGGATAAGGAATAATAGACGGCCGTTGGATAATGAGGAGCCGAGAGATTATGCTAATCGGTGTTCGGTGCAGTGGCACCGGGTCTCCATTTACCCTGAGAGGTTGGGTGATGTTGCCATGAAGCATGTTATTCAGGGTTCAATTTTATACTTGGAGGGGAATCTGGAGACAAAAATATTCACGGATCCAATAACTGGACTTGTTCGGCGTATTAGAGAAGTTGCCGTACGTAGAAATGGTACACTTATTACTCCATTGCACTCTTTGAATGTTGAAACCTCTCAGAGAAAGAAAAGAAGAAAAAAAAGGCAAAGTAACATATGTGACACGGTTCAATGTCTCCTTTATTGA

Network for GWHGAAZE030413

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00436.26	SSB	92	199	6.20E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03111	ssb	DNA replication	map03030
		Mismatch repair	map03430
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0003697	molecular_function	single-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.821
	SRR3591706	second leaf	7.709
	SRR3591707	mature leaf	6.030
	SRR3591708	Shoot apex	15.583
	SRR3591709	Stem	8.720
	SRR3591710	White floral bud	6.823
	SRR3591711	White flower	10.045
	SRR3591712	Green floral bud	15.058
	SRR3591713	Yellow flower	8.837
SRP173429	SRR8316895	Juvenile bud stage	10.493
	SRR8316896	Juvenile bud stage	16.993
	SRR8316897	Juvenile bud stage	4.672
	SRR8316894	Third green stage	4.822
	SRR8316900	Third green stage	14.603
	SRR8316901	Third green stage	13.771
	SRR8316898	Complete white stage	1.030
	SRR8316899	Complete white stage	11.581
	SRR8316903	Complete white stage	1.506
	SRR8316902	Silver flowering stage	2.565
	SRR8316904	Silver flowering stage	1.305
	SRR8316905	Silver flowering stage	1.961
	SRR8316906	Gold flowering stage	4.263
	SRR8316907	Gold flowering stage	3.625
	SRR8316908	Gold flowering stage	5.922
SRP132670	SRR6706286	Control	18.308
	SRR6706287	Light intensity 50%	16.554
	SRR6706288	Light intensity 20%	18.879
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.512
	CNS0095593	Slightly white alabastrum(diploid) 2	9.188
	CNS0095594	Slightly white alabastrum(diploid) 3	12.516
	CNS0095595	Whole white alabastrum(diploid) 2	8.437
	CNS0095596	Whole white alabastrum(diploid) 3	11.316
	CNS0095597	Whole white alabastrum(diploid) 4	7.483
	CNS0095598	Silvery flower (diploied) 1	5.262
	CNS0095599	Silvery flower (diploied) 2	4.338
	CNS0095600	Silvery flower (diploied) 3	3.170
	CNS0095601	Golden flower (diploid) 1	3.296
	CNS0095602	Golden flower (diploid) 2	2.715
	CNS0095603	Golden flower (diploid) 3	3.205
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.318
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.673
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.559
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.988
	CNS0095610	Silvery flower (tetraploid) 1	9.641
	CNS0095611	Silvery flower (tetraploid) 2	7.059
	CNS0095612	Silvery flower (tetraploid) 3	4.744
	CNS0095613	Golden flower (tetraploid) 1	4.505
	CNS0095614	Golden flower (tetraploid) 2	6.186
	CNS0095615	Golden flower (tetraploid) 3	2.749
CRA001975	CRR073297	Stem 1	7.954
	CRR073298	Stem 2	5.972
	CRR073299	Stem 3	10.295
	CRR073300	Leaf 1	8.156
	CRR073301	Leaf 2	7.246
	CRR073302	Leaf 3	6.766
	CRR073303	Juvenile bud 1	7.592
	CRR073304	Juvenile bud 2	5.387
	CRR073305	Juvenile bud 3	7.467
	CRR073306	Third green 1	0.057
	CRR073307	Third green 2	0.093
	CRR073308	Third green 3	0.558
	CRR073309	Second white 1	0.155
	CRR073310	Second white 2	0.418
	CRR073311	Second white 3	0.210
	CRR073312	Silver flowering 1	0.476
	CRR073313	Silver flowering 2	0.103
	CRR073314	Silver flowering 3	0.332
	CRR073315	Gold flowering 1	3.170
	CRR073316	Gold flowering 2	2.791
	CRR073317	Gold flowering 3	5.068
	CRR073318	Tawny withering 1	4.362
	CRR073319	Tawny withering 2	3.492
	CRR073320	Tawny withering 3	3.580