Detail information of GWHGAAZE030381


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278560.10PREDICTED: AMSH-like ubiquitin thioesterase 1 [Vitis vinifera]
Swissprottr|Q8VYB5|AMSH1_ARATH0AMSH-like ubiquitin thioesterase 1
trEMBLtr|D7SJ09|D7SJ09_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI15470.3}
TAIR10AT1G48790.11E-149associated molecule with the SH3 domain of STAM 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4256439242571638-
GWHAAZE00000009mRNA4256439242571638-
GWHAAZE00000009exon4257152542571638-
GWHAAZE00000009exon4256933642569416-
GWHAAZE00000009exon4256878642568974-
GWHAAZE00000009exon4256853642568630-
GWHAAZE00000009exon4256794442568078-
GWHAAZE00000009exon4256712042567225-
GWHAAZE00000009exon4256700042567046-
GWHAAZE00000009exon4256635942566689-
GWHAAZE00000009exon4256608042566169-
GWHAAZE00000009exon4256592342565985-
GWHAAZE00000009exon4256577242565846-
GWHAAZE00000009exon4256494442565006-
GWHAAZE00000009exon4256467842564730-
GWHAAZE00000009exon4256439242564566-
GWHAAZE00000009CDS4257152542571638-
GWHAAZE00000009CDS4256933642569416-
GWHAAZE00000009CDS4256878642568974-
GWHAAZE00000009CDS4256853642568630-
GWHAAZE00000009CDS4256794442568078-
GWHAAZE00000009CDS4256712042567225-
GWHAAZE00000009CDS4256700042567046-
GWHAAZE00000009CDS4256635942566689-
GWHAAZE00000009CDS4256608042566169-
GWHAAZE00000009CDS4256592342565985-
GWHAAZE00000009CDS4256577242565846-
GWHAAZE00000009CDS4256494442565006-
GWHAAZE00000009CDS4256467842564730-
GWHAAZE00000009CDS4256439242564566-
Transcript Sequence

Network for GWHGAAZE030381

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01398.22JAB3614671.70E-17
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
K11866STAMBP, AMSH Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.520
SRR3591706second leaf14.610
SRR3591707mature leaf11.385
SRR3591708Shoot apex22.884
SRR3591709Stem32.405
SRR3591710White floral bud18.507
SRR3591711White flower25.060
SRR3591712Green floral bud17.823
SRR3591713Yellow flower24.529
SRP173429 SRR8316895Juvenile bud stage 12.230
SRR8316896Juvenile bud stage 14.085
SRR8316897Juvenile bud stage 8.691
SRR8316894Third green stage 6.825
SRR8316900Third green stage 20.447
SRR8316901Third green stage 19.846
SRR8316898Complete white stage 6.429
SRR8316899Complete white stage 24.766
SRR8316903Complete white stage 13.861
SRR8316902Silver flowering stage8.705
SRR8316904Silver flowering stage16.234
SRR8316905Silver flowering stage7.495
SRR8316906Gold flowering stage 19.472
SRR8316907Gold flowering stage 20.836
SRR8316908Gold flowering stage 20.662
SRP132670SRR6706286Control11.724
SRR6706287Light intensity 50%11.118
SRR6706288Light intensity 20%11.709
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.235
CNS0095593Slightly white alabastrum(diploid) 214.478
CNS0095594Slightly white alabastrum(diploid) 310.989
CNS0095595Whole white alabastrum(diploid) 213.464
CNS0095596Whole white alabastrum(diploid) 312.390
CNS0095597Whole white alabastrum(diploid) 411.590
CNS0095598Silvery flower (diploied) 113.849
CNS0095599Silvery flower (diploied) 212.379
CNS0095600Silvery flower (diploied) 320.829
CNS0095601Golden flower (diploid) 112.106
CNS0095602Golden flower (diploid) 221.854
CNS0095603Golden flower (diploid) 319.781
CNS0095604Slightly white alabastrum(tetraploid) 115.250
CNS0095605Slightly white alabastrum(tetraploid) 212.487
CNS0095606Slightly white alabastrum(tetraploid) 323.090
CNS0095607Whole white alabastrum(tetraploid) 18.705
CNS0095608Whole white alabastrum(tetraploid) 29.696
CNS0095609Whole white alabastrum(tetraploid) 316.917
CNS0095610Silvery flower (tetraploid) 118.801
CNS0095611Silvery flower (tetraploid) 221.528
CNS0095612Silvery flower (tetraploid) 316.110
CNS0095613Golden flower (tetraploid) 111.684
CNS0095614Golden flower (tetraploid) 218.825
CNS0095615Golden flower (tetraploid) 314.883
CRA001975CRR073297Stem 115.791
CRR073298Stem 215.497
CRR073299Stem 312.323
CRR073300Leaf 116.102
CRR073301Leaf 213.602
CRR073302Leaf 316.751
CRR073303Juvenile bud 113.299
CRR073304Juvenile bud 212.698
CRR073305Juvenile bud 318.359
CRR073306Third green 14.293
CRR073307Third green 24.664
CRR073308Third green 35.921
CRR073309Second white 15.659
CRR073310Second white 26.353
CRR073311Second white 36.566
CRR073312Silver flowering 15.351
CRR073313Silver flowering 23.269
CRR073314Silver flowering 34.325
CRR073315Gold flowering 110.189
CRR073316Gold flowering 211.589
CRR073317Gold flowering 36.314
CRR073318Tawny withering 117.242
CRR073319Tawny withering 212.865
CRR073320Tawny withering 315.301