Gene detail

Detail information of GWHGAAZE030363

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277625.3	0	PREDICTED: ATP-dependent RNA helicase DHX36 [Vitis vinifera]
COG	YP_008046674.1	3E-85	ATP-dependent helicase HrpA
Swissprot	tr\|P0CE10\|Y4102_ARATH	1E-56	Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBL	tr\|A0A061FVB8\|A0A061FVB8_THECC	0	DEA(D/H)-box RNA helicase family protein isoform 1 {ECO:0000313\|EMBL:EOY21156.1}
TAIR10	AT1G48650.1	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42290834	42302923	-
GWHAAZE00000009	mRNA	42290834	42302923	-
GWHAAZE00000009	exon	42302489	42302923	-
GWHAAZE00000009	exon	42301219	42301373	-
GWHAAZE00000009	exon	42301063	42301150	-
GWHAAZE00000009	exon	42300586	42300825	-
GWHAAZE00000009	exon	42298459	42298554	-
GWHAAZE00000009	exon	42297196	42297384	-
GWHAAZE00000009	exon	42296931	42297090	-
GWHAAZE00000009	exon	42296641	42296852	-
GWHAAZE00000009	exon	42295861	42296028	-
GWHAAZE00000009	exon	42295496	42295768	-
GWHAAZE00000009	exon	42293980	42294174	-
GWHAAZE00000009	exon	42293646	42293849	-
GWHAAZE00000009	exon	42293434	42293503	-
GWHAAZE00000009	exon	42293167	42293315	-
GWHAAZE00000009	exon	42292106	42292411	-
GWHAAZE00000009	exon	42291928	42291987	-
GWHAAZE00000009	exon	42291658	42291810	-
GWHAAZE00000009	exon	42291470	42291530	-
GWHAAZE00000009	exon	42290834	42291237	-
GWHAAZE00000009	CDS	42302489	42302923	-
GWHAAZE00000009	CDS	42301219	42301373	-
GWHAAZE00000009	CDS	42301063	42301150	-
GWHAAZE00000009	CDS	42300586	42300825	-
GWHAAZE00000009	CDS	42298459	42298554	-
GWHAAZE00000009	CDS	42297196	42297384	-
GWHAAZE00000009	CDS	42296931	42297090	-
GWHAAZE00000009	CDS	42296641	42296852	-
GWHAAZE00000009	CDS	42295861	42296028	-
GWHAAZE00000009	CDS	42295496	42295768	-
GWHAAZE00000009	CDS	42293980	42294174	-
GWHAAZE00000009	CDS	42293646	42293849	-
GWHAAZE00000009	CDS	42293434	42293503	-
GWHAAZE00000009	CDS	42293167	42293315	-
GWHAAZE00000009	CDS	42292106	42292411	-
GWHAAZE00000009	CDS	42291928	42291987	-
GWHAAZE00000009	CDS	42291658	42291810	-
GWHAAZE00000009	CDS	42291470	42291530	-
GWHAAZE00000009	CDS	42290834	42291237	-

Transcript Sequence
>GWHTAAZE030397 ATGTCTTCTTCCTCAACTTTCCTTCACAATTACCTCAGAGCCACAACTCCATATCTAACCATGTCTCTTCGACAACCTAAAACCTCCAATACTTTAACCACCACTTCTCTTCAATTGCGTCGTCGCCTTCATTTAAACCCTAAAAACACCAGACACCTCACTCCACCGGCTCCGCCTCCCATGGGTGGTGTTTCTCTAGCTCGCACCGCCGTACACTGCCACCGCCACCGCCTGAGGTTTACATTCGCGCTCGCTTGCTCGGCGGCTTCCTCCCGTGTTTCACCAACTGTTGTAATGTATAGGAAGAGTGCCTCTTCTCCTTTGCCCTATTTTCATCAGCAGAGCTTGCCGTACGGTAGGCATGCGTACGACGAGTATGCCTCGGAGGAGGAATCTGATCTCGAACTTCGGTCATCTCAGCAATCTCAACAAATTGGCGCTTCAACCCTTGAAAATATTGAAGAGTGGAAGTGGAAGTTAACCATGCTTTTACGCAACAAAGAAGAACAAGAAGTGTCATCAATGGAGAGAAAAGATAGACGAGATTTCGAACAACTTTCAGCTCTGGCTACTCGAATGGGTTTACACAGCCGGCAATATTCAAAAGTAGTTGTTTTTAGCAAAGCCCCATTGCCAAATTACAGATCGGATCTGGATCTTAAGCGTCCACAGAGGGAGGTGGTCTTACCTTTTGGGTTGCAAAGCCGGGTAGATGCTCATCTCAAAGCATACCTTTCGAGGAAGTCTACAAACGAGACATTTCAGGATAATGCTTTTTCAAATGCAAGCATGGGCAACCATTTTGGTAGCAATGGAGTTTATGATCAAGAGGAGCCTATATCAAGAATTAGTGTTGCTATGGAGGGAATTCTTAAGCGGAAGAGCTTGCTACTGCGTAATAAACAACAAGATTGGCAGGAATCTCCAGAAGGTCAAAAGATGCAAGAATTTCGCAGAAGTCTCCCTGCATATAAAGAAAGAGATTCACTGCTAAACAACATTTCACAAAATCAGGTGGTGGTAGTCTCTGGTGAAACTGGCTGTGGTAAAACCACACAACTTCCTCAATACATCTTGGAATCTGAGACAGAAGCTGGTCGTGGAGCTGTTTGCAGCATTATATGTACTCAGCCTAGACGAATATCTGCAATGTCAGTTGCTGAGAGAGTTGCTGCAGAGCGAGGGGAGAAACTGGGAGAATCTGTTGGTTATAAAGTTCGGCTAGAGGGAATGAGAGGGAGGGATACCCGCCTTCTGTTTTGTACTACTGGGATTTTGTTGAGGAGATTACTTGTTGACAGAAAGTTGAAAGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTCGTGGGACTAAAATGAGTTTCTGGTTTTGTATGGTAAATGTCTTTCTTACCATAGTCTTGCCTTTTGTTCCAGATTTTCTTCTCATTGTCCTCAAGGATCTTCTTCCCCGTCGGCCAGAATTGAGATTGATTTTGATGAGTGCAACTCTAAATGCTGACCTTTTCTCCTCCTACTTCGGTGGTGCTCCAATGATCCACATACCTGGATTTACACACCCTGTTCGAAGTCATTTCCTAGAGAATGTTTTGGAAGTGACCGGGTATAGGTTAACTACATATAACCAAATTGATAATTATGGTCAAGAAAAGAGTTGGAAAATGCAGAAACAAACTATCAAGAAAAGGAAGAGCCAAATCGCGTCATCAGTGGAGGATGCTCTTGAAGTTGCTGATTTTAGGGAGTATAATCCTCGGACCCGGGATTCCCTATCCTGCTGGAATCCTGATTCAATTGGCTTTAACCTAATTGAGCATGTGCTTTGCCATATTTGTAGAAGAGAACGGCCTGGCGCTGTTTTAGTGTTTATGACTGGTTGGGACGACATTAATTCTCTGAAGGATCAGCTCCAATCTAATCCCCTCTTGGGAGATCCAAGCAAAGTTTTGTTGCTTGCATGCCATGGTTCAATGGCCAGTTCAGAACAGAGGTTGATATTTGACAAGCCTGAAGATGGAGTGAGGAAAATAGTTCTAGCCACCAACATGGCTGAGACAAGTATAACCATTAACGATGTTGTTTTTGTGGTCGACTGTGGAAAGGCAAAAGAGACATCATATGATGCACTCAATAATACTCCGTGTTTGCTTCCTACCTGGATCTCAAAGGCTTCAGCTCGCCAAAGAAGAGGAAGAGCTGGCCGTGTTCAACCAGGCGAGTGCTACCATCTCTATCCTAGATGTGTATATGATGCTTTTGTGGACTATCAATTGCCGGAACTTTTGAGGACACCTTTACAATCTCTATGTTTGCAAATCAAAAGTTTACAACTTGGGAGTATTTCAGAGTTCCTATCTAGGGCCTTGCAACCACCAGAGCCTCTATCAGTTCAAAATGCTGTTGAATATTTGAAGATAATCGGGGCCTTAGATGAATATGAAAATCTTACAGTGTTAGGGCGCCACCTGTCAATGCTTCCTGTTGAGCCAAAACTCGGGAAAATGCTTATATTTGGGGCTATTTTCAATTGCCTCCAACCGGTAATGACTGTTGTTGCTGGTCTAAGTGTCCGAGATCCATTCCTAATGCCATTTGACAAGAAGGACCTTGCCGAGTCCGCAAAGGCCCAGTTCTCTGCACGCGAATTTAGTGACCATCTCGCTCTAGTCCGGGCTTATGATGGTTGGAAAGATGCTGAGAGAAAGCAATCTGGTTATGAATACTGTTGGAGAAATTTCCTTTCTGCACAAACCTTGAAAGCCATCGATTCCCTTCGAAAGCAATTCCTTTCTTTGCTTAGGGACACTGGTCTCATTGACAATGTAGAAAGTTGCAACTCATGGAGCCATGACCATCATCTCATTCGAGCTGTTATCTGCACGGGGTTGTTCCCTGGAATATGCTCTGTCGTGAACAAAGAAAAGTCAATAACACTGAAAACAATGGAGGATGGTCCTGTACTTTTGTATTCGAATTCTGTGAATTCCCAGGAACCTAAAATTCCATATCCATGGTTAGTGTTTAACGACAAGGTGAAAGTGAACTCAGTATTTCTGCGGGATTCAACGGCTGTATCTGATTCTGTGGTACTTTTATTTGGAGGAAGCGTTTATAAAGGGGGCTTGGATGGGCACTTGAAAATGTTGGGAGGATATTTGGAGTTTTTCATGAAACCTGACTTAGCAGAGGACCAATGTGAGGGTAGATTTGTCTATGGTCGGCAGGAGCCAAAGCCCTCAAAAAAGATACCAAAAGAGATCAAAAAGGGAACAACACTGCAAGTAAGTGGTGGTGATAATTCCAAGAATCATCTCCAAACAGTACTACTTAGAGCAGGGCATCAATCACCCACATACAAGACCACACATCTGAAAAACAACAGGTTCCGTTCAACCGTGTTTTTCAACGGGTTGGATTTCGTAGGTCAGCCATGCACCAATAAGAAACTAGCAGAAAAGGATGCAGCTGCTGAAGCTCTACAGTGGTTGATGGGCGAGAGCCAGTCATCACACAAGGCCATTGACCATGCATCAACACTTCTGAAGAAGAGCAAAAAGAAACCTCAAATGCATGCTACTAAGTGGAGATAG

Network for GWHGAAZE030363

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	331	459	5.50E-06
PF00271.32	Helicase_C	613	745	2.90E-15
PF04408.24	HA2	809	894	1.30E-20
PF07717.17	OB_NTP_bind	964	1045	7.80E-16
PF00035.27	dsrm	1110	1172	1.70E-07

Protein Sequence

>GWHPAAZE030381
MSSSSTFLHNYLRATTPYLTMSLRQPKTSNTLTTTSLQLRRRLHLNPKNTRHLTPPAPPPMGGVSLARTAVHCHRHRLRFTFALACSAASSRVSPTVVMYRKSASSPLPYFHQQSLPYGRHAYDEYASEEESDLELRSSQQSQQIGASTLENIEEWKWKLTMLLRNKEEQEVSSMERKDRRDFEQLSALATRMGLHSRQYSKVVVFSKAPLPNYRSDLDLKRPQREVVLPFGLQSRVDAHLKAYLSRKSTNETFQDNAFSNASMGNHFGSNGVYDQEEPISRISVAMEGILKRKSLLLRNKQQDWQESPEGQKMQEFRRSLPAYKERDSLLNNISQNQVVVVSGETGCGKTTQLPQYILESETEAGRGAVCSIICTQPRRISAMSVAERVAAERGEKLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLVDRKLKGVTHVIVDEIHERGMNEDFLRGTKMSFWFCMVNVFLTIVLPFVPDFLLIVLKDLLPRRPELRLILMSATLNADLFSSYFGGAPMIHIPGFTHPVRSHFLENVLEVTGYRLTTYNQIDNYGQEKSWKMQKQTIKKRKSQIASSVEDALEVADFREYNPRTRDSLSCWNPDSIGFNLIEHVLCHICRRERPGAVLVFMTGWDDINSLKDQLQSNPLLGDPSKVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFVDYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDEYENLTVLGRHLSMLPVEPKLGKMLIFGAIFNCLQPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSAREFSDHLALVRAYDGWKDAERKQSGYEYCWRNFLSAQTLKAIDSLRKQFLSLLRDTGLIDNVESCNSWSHDHHLIRAVICTGLFPGICSVVNKEKSITLKTMEDGPVLLYSNSVNSQEPKIPYPWLVFNDKVKVNSVFLRDSTAVSDSVVLLFGGSVYKGGLDGHLKMLGGYLEFFMKPDLAEDQCEGRFVYGRQEPKPSKKIPKEIKKGTTLQVSGGDNSKNHLQTVLLRAGHQSPTYKTTHLKNNRFRSTVFFNGLDFVGQPCTNKKLAEKDAAAEALQWLMGESQSSHKAIDHASTLLKKSKKKPQMHATKWR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14442	DHX36, RHAU	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.131
	SRR3591706	second leaf	11.392
	SRR3591707	mature leaf	20.247
	SRR3591708	Shoot apex	15.250
	SRR3591709	Stem	7.546
	SRR3591710	White floral bud	10.607
	SRR3591711	White flower	19.326
	SRR3591712	Green floral bud	12.681
	SRR3591713	Yellow flower	10.244
SRP173429	SRR8316895	Juvenile bud stage	7.318
	SRR8316896	Juvenile bud stage	9.137
	SRR8316897	Juvenile bud stage	5.351
	SRR8316894	Third green stage	4.936
	SRR8316900	Third green stage	9.569
	SRR8316901	Third green stage	9.887
	SRR8316898	Complete white stage	1.402
	SRR8316899	Complete white stage	10.907
	SRR8316903	Complete white stage	5.252
	SRR8316902	Silver flowering stage	3.157
	SRR8316904	Silver flowering stage	6.135
	SRR8316905	Silver flowering stage	2.709
	SRR8316906	Gold flowering stage	7.476
	SRR8316907	Gold flowering stage	6.173
	SRR8316908	Gold flowering stage	8.997
SRP132670	SRR6706286	Control	8.399
	SRR6706287	Light intensity 50%	9.248
	SRR6706288	Light intensity 20%	9.350
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.492
	CNS0095593	Slightly white alabastrum(diploid) 2	3.051
	CNS0095594	Slightly white alabastrum(diploid) 3	3.120
	CNS0095595	Whole white alabastrum(diploid) 2	3.743
	CNS0095596	Whole white alabastrum(diploid) 3	3.030
	CNS0095597	Whole white alabastrum(diploid) 4	2.873
	CNS0095598	Silvery flower (diploied) 1	8.186
	CNS0095599	Silvery flower (diploied) 2	5.227
	CNS0095600	Silvery flower (diploied) 3	11.136
	CNS0095601	Golden flower (diploid) 1	5.496
	CNS0095602	Golden flower (diploid) 2	10.976
	CNS0095603	Golden flower (diploid) 3	11.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.558
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.304
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.660
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.647
	CNS0095610	Silvery flower (tetraploid) 1	14.343
	CNS0095611	Silvery flower (tetraploid) 2	16.688
	CNS0095612	Silvery flower (tetraploid) 3	7.405
	CNS0095613	Golden flower (tetraploid) 1	4.311
	CNS0095614	Golden flower (tetraploid) 2	9.912
	CNS0095615	Golden flower (tetraploid) 3	6.137
CRA001975	CRR073297	Stem 1	9.316
	CRR073298	Stem 2	9.515
	CRR073299	Stem 3	6.424
	CRR073300	Leaf 1	8.689
	CRR073301	Leaf 2	7.726
	CRR073302	Leaf 3	4.796
	CRR073303	Juvenile bud 1	5.220
	CRR073304	Juvenile bud 2	2.894
	CRR073305	Juvenile bud 3	6.359
	CRR073306	Third green 1	0.491
	CRR073307	Third green 2	0.713
	CRR073308	Third green 3	0.897
	CRR073309	Second white 1	1.698
	CRR073310	Second white 2	1.913
	CRR073311	Second white 3	2.096
	CRR073312	Silver flowering 1	1.299
	CRR073313	Silver flowering 2	1.638
	CRR073314	Silver flowering 3	1.034
	CRR073315	Gold flowering 1	13.116
	CRR073316	Gold flowering 2	23.957
	CRR073317	Gold flowering 3	14.113
	CRR073318	Tawny withering 1	5.073
	CRR073319	Tawny withering 2	4.297
	CRR073320	Tawny withering 3	4.919