Gene detail

Detail information of GWHGAAZE030352

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009791461.1	1.847E-107	PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana sylvestris]
Swissprot	tr\|Q949S9\|SPF27_ARATH	1E-85	Pre-mRNA-splicing factor SPF27 homolog
trEMBL	tr\|M1A475\|M1A475_SOLTU	3E-103	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400014424}
TAIR10	AT3G18165.1	9E-62	modifier of snc1,4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42192128	42196277	+
GWHAAZE00000009	mRNA	42192128	42196277	+
GWHAAZE00000009	exon	42192128	42192505	+
GWHAAZE00000009	exon	42193046	42193239	+
GWHAAZE00000009	exon	42193975	42194058	+
GWHAAZE00000009	exon	42194643	42194712	+
GWHAAZE00000009	exon	42196266	42196277	+
GWHAAZE00000009	CDS	42192128	42192505	+
GWHAAZE00000009	CDS	42193046	42193239	+
GWHAAZE00000009	CDS	42193975	42194058	+
GWHAAZE00000009	CDS	42194643	42194712	+
GWHAAZE00000009	CDS	42196266	42196277	+

Transcript Sequence
>GWHTAAZE030386 GGTAAATTTGCCACCCGTGGCAAAATACAATCGCGAAGACAAGGACTTGAAAACGAGAACGGAGAGCTCTCTCAGTTACGTACATCCTCAACAACAGTGGCGATGGCGGAAAATACAAACGGAGGAGATATACTAATGCTAGAGGCACCTCCGTCGTCCTCTCGACCGTCTTGGTCCACCGGAGCTGAAATAATAGACGCATTGCCCTACATCGACGACGACTATGGCGACCCCATAGTTAAAGAAGAGGTGGACCGTTTGGTGGAAGAAGAGATGCGTAGGAGCTCCAAAAAACCCTCCGATTTCCTCAAGGACCTCCCTCCCCTTCCCATCTTCAACTTTGAGGTCACCTTTCTTCTCTATAGAATCAGTTCAATGCACTTTTCTGTTATACAGAATCATCCGATGCTTGCTAGGGAGTACGAGAGAGTGAGAGCAGGGAAACCACCTGTGCCACTTGATATGTCACGATATGGACTGGATATGCCATCTATGAATAAGCGGAATGACGAAAGTGCCTGGAAACAGGCGCTCCAGAAAGCTCAGCGTTTACTGCAGCATCAAGTAATCAGGCTAGAGAATCTGGACCTTATGTCAAAACACAGCGGTGACGTCTGGAAACAGCACAACCAACGACTAGAGGCATTCTTGTCCAGAATGCAAGCCCAAGCAGCAGAACTAAATGAAAAGATAGAAGTCATAAATCGTGAAAGGAAATATCATCAGGTTAAAGTTTGA

Network for GWHGAAZE030352

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05700.12	BCAS2	64	244	1.10E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12861	BCAS2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006397	biological_process	mRNA processing

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.303
	SRR3591706	second leaf	13.530
	SRR3591707	mature leaf	6.884
	SRR3591708	Shoot apex	27.114
	SRR3591709	Stem	13.757
	SRR3591710	White floral bud	16.921
	SRR3591711	White flower	15.262
	SRR3591712	Green floral bud	17.073
	SRR3591713	Yellow flower	14.662
SRP173429	SRR8316895	Juvenile bud stage	21.397
	SRR8316896	Juvenile bud stage	31.051
	SRR8316897	Juvenile bud stage	14.183
	SRR8316894	Third green stage	13.861
	SRR8316900	Third green stage	30.974
	SRR8316901	Third green stage	34.619
	SRR8316898	Complete white stage	15.193
	SRR8316899	Complete white stage	39.872
	SRR8316903	Complete white stage	19.760
	SRR8316902	Silver flowering stage	9.849
	SRR8316904	Silver flowering stage	13.431
	SRR8316905	Silver flowering stage	8.033
	SRR8316906	Gold flowering stage	25.284
	SRR8316907	Gold flowering stage	27.840
	SRR8316908	Gold flowering stage	25.664
SRP132670	SRR6706286	Control	38.534
	SRR6706287	Light intensity 50%	37.856
	SRR6706288	Light intensity 20%	38.997
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.059
	CNS0095593	Slightly white alabastrum(diploid) 2	20.656
	CNS0095594	Slightly white alabastrum(diploid) 3	18.044
	CNS0095595	Whole white alabastrum(diploid) 2	15.749
	CNS0095596	Whole white alabastrum(diploid) 3	18.709
	CNS0095597	Whole white alabastrum(diploid) 4	15.534
	CNS0095598	Silvery flower (diploied) 1	16.328
	CNS0095599	Silvery flower (diploied) 2	15.946
	CNS0095600	Silvery flower (diploied) 3	18.773
	CNS0095601	Golden flower (diploid) 1	20.356
	CNS0095602	Golden flower (diploid) 2	23.075
	CNS0095603	Golden flower (diploid) 3	19.893
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.830
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.336
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.902
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.920
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.279
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.271
	CNS0095610	Silvery flower (tetraploid) 1	21.219
	CNS0095611	Silvery flower (tetraploid) 2	20.771
	CNS0095612	Silvery flower (tetraploid) 3	16.887
	CNS0095613	Golden flower (tetraploid) 1	12.755
	CNS0095614	Golden flower (tetraploid) 2	18.528
	CNS0095615	Golden flower (tetraploid) 3	14.965
CRA001975	CRR073297	Stem 1	45.300
	CRR073298	Stem 2	44.429
	CRR073299	Stem 3	45.461
	CRR073300	Leaf 1	39.590
	CRR073301	Leaf 2	45.405
	CRR073302	Leaf 3	44.657
	CRR073303	Juvenile bud 1	37.603
	CRR073304	Juvenile bud 2	29.570
	CRR073305	Juvenile bud 3	36.266
	CRR073306	Third green 1	11.198
	CRR073307	Third green 2	11.661
	CRR073308	Third green 3	16.809
	CRR073309	Second white 1	9.784
	CRR073310	Second white 2	13.492
	CRR073311	Second white 3	12.062
	CRR073312	Silver flowering 1	11.786
	CRR073313	Silver flowering 2	15.094
	CRR073314	Silver flowering 3	14.193
	CRR073315	Gold flowering 1	8.281
	CRR073316	Gold flowering 2	18.396
	CRR073317	Gold flowering 3	13.448
	CRR073318	Tawny withering 1	38.499
	CRR073319	Tawny withering 2	30.916
	CRR073320	Tawny withering 3	33.206