Gene detail

Detail information of GWHGAAZE030351

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281306.1	0	PREDICTED: peroxisome biogenesis protein 3-2 [Vitis vinifera]
Swissprot	tr\|Q8S9K7\|PEX32_ARATH	2E-164	Peroxisome biogenesis protein 3-2
trEMBL	tr\|D7SJ78\|D7SJ78_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15539.3}
TAIR10	AT1G48635.1	2E-132	peroxin 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42182150	42187646	+
GWHAAZE00000009	mRNA	42182150	42187646	+
GWHAAZE00000009	exon	42182150	42182310	+
GWHAAZE00000009	exon	42182405	42182604	+
GWHAAZE00000009	exon	42182714	42182844	+
GWHAAZE00000009	exon	42185890	42186017	+
GWHAAZE00000009	exon	42186302	42186523	+
GWHAAZE00000009	exon	42187382	42187646	+
GWHAAZE00000009	CDS	42182150	42182310	+
GWHAAZE00000009	CDS	42182405	42182604	+
GWHAAZE00000009	CDS	42182714	42182844	+
GWHAAZE00000009	CDS	42185890	42186017	+
GWHAAZE00000009	CDS	42186302	42186523	+
GWHAAZE00000009	CDS	42187382	42187646	+

Transcript Sequence
>GWHTAAZE030385 GAGTTTTGGAAAAGGCATAACAGGAAGTTGTATGTTACACTCGGAGTTTTTGGAAGTGGGTACTTATTGTACAAGCTTTATGATACTCAGAGGCGTAAACTCGCTGATCTTGAGAGAGAACTTGCGGGCGAGAGGGAGAATGATGAACTTGTTAAGGCCCAAATGCAAGCGCATTTCGAGAACATTCAAAGGATAGCCGATACGACGACATTGCCTCATGCCATGCTCTATTTAAGTAGCCGGGTAGCTGAAGAGTTGGATCTTTCACACTTAACAGAGAGGCTAATGAAAGGGAAGGGTCAGCCAAACACACTTACATCTTTGGAGAAACTTGAGCTATGGGATAGACTCAAAATTTTGAGTTTTACCAGAATGGTGTTGTCCGTTTGGTCAATGACGATGCTTAGCTTATATATTAGAGTTCAAGTCAATATCTTAGGGAGACATCTATACATCGACACTGCACGTGGTCTTGGAGCTTCTTTTCTATTTGAGGAAGCTGATCTAATTGACAGAAATGACCTGCAGCAGTTTTTGGCAACTGCCGACTTTCTTTCTAATTATGGAATGCCCAGCTTGATATCCAATATGCAGGCTGCAGCAACTGAAGTCCTCAAGGGAAAACAGTTGAAGGATCTGTTCGATGCCACTGTACTTCTTGAAACCATTGTGCAGATACTGGACATGTTCATGAGCACAGGAAGCCCTCATCACTGGGTAGATTATTTGATGCCACAAGATCCCAAAATCTTCAAAACAGCTGTATCTTCTGATGACTCTGGTCTTTCTGATTTTACCAAATTTCACCAACTAATTGGGGAGACACGCGCAGTCTTATCAAGTGCCGAATTTGCAAGTGTGGTGGATATATCATTGAAAACAGTAGTTGATGCGCTGGTGGAAGATCTAAAGCTTCAACAGGGAGAAAACAATCCGTTATCAAATATCCCGTTAGCCAAACTGGTGCCCAGAGTCGCTCAGATGGGCCTGTTGTTGCTTGAAGAACCGAGCAGGAACAGGTTCGTCCAAATTATCCGAAACATAACCGAAGTTGAAGTCTTCTTTACTCTCCTGTATGCAAACATGCCAACTCTTAAAGATTTGTGA

Network for GWHGAAZE030351

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04882.13	Peroxin-3	102	155	5.00E-13
PF04882.13	Peroxin-3	176	361	4.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13336	PEX3	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0007031	biological_process	peroxisome organization
GO:0005779	cellular_component	integral component of peroxisomal membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.284
	SRR3591706	second leaf	17.434
	SRR3591707	mature leaf	13.070
	SRR3591708	Shoot apex	30.126
	SRR3591709	Stem	21.052
	SRR3591710	White floral bud	19.845
	SRR3591711	White flower	30.149
	SRR3591712	Green floral bud	19.709
	SRR3591713	Yellow flower	22.157
SRP173429	SRR8316895	Juvenile bud stage	16.995
	SRR8316896	Juvenile bud stage	23.801
	SRR8316897	Juvenile bud stage	10.426
	SRR8316894	Third green stage	10.029
	SRR8316900	Third green stage	25.121
	SRR8316901	Third green stage	22.977
	SRR8316898	Complete white stage	13.119
	SRR8316899	Complete white stage	33.355
	SRR8316903	Complete white stage	14.906
	SRR8316902	Silver flowering stage	14.291
	SRR8316904	Silver flowering stage	21.577
	SRR8316905	Silver flowering stage	9.370
	SRR8316906	Gold flowering stage	31.830
	SRR8316907	Gold flowering stage	33.401
	SRR8316908	Gold flowering stage	30.469
SRP132670	SRR6706286	Control	24.820
	SRR6706287	Light intensity 50%	26.285
	SRR6706288	Light intensity 20%	26.996
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.120
	CNS0095593	Slightly white alabastrum(diploid) 2	14.933
	CNS0095594	Slightly white alabastrum(diploid) 3	13.922
	CNS0095595	Whole white alabastrum(diploid) 2	10.998
	CNS0095596	Whole white alabastrum(diploid) 3	13.091
	CNS0095597	Whole white alabastrum(diploid) 4	11.119
	CNS0095598	Silvery flower (diploied) 1	17.759
	CNS0095599	Silvery flower (diploied) 2	14.782
	CNS0095600	Silvery flower (diploied) 3	24.192
	CNS0095601	Golden flower (diploid) 1	13.455
	CNS0095602	Golden flower (diploid) 2	21.555
	CNS0095603	Golden flower (diploid) 3	18.390
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.240
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.529
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.238
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.580
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.924
	CNS0095610	Silvery flower (tetraploid) 1	29.277
	CNS0095611	Silvery flower (tetraploid) 2	24.759
	CNS0095612	Silvery flower (tetraploid) 3	24.892
	CNS0095613	Golden flower (tetraploid) 1	11.857
	CNS0095614	Golden flower (tetraploid) 2	18.108
	CNS0095615	Golden flower (tetraploid) 3	19.042
CRA001975	CRR073297	Stem 1	24.017
	CRR073298	Stem 2	25.050
	CRR073299	Stem 3	25.027
	CRR073300	Leaf 1	26.007
	CRR073301	Leaf 2	24.875
	CRR073302	Leaf 3	22.306
	CRR073303	Juvenile bud 1	23.155
	CRR073304	Juvenile bud 2	17.808
	CRR073305	Juvenile bud 3	20.638
	CRR073306	Third green 1	7.471
	CRR073307	Third green 2	11.312
	CRR073308	Third green 3	12.475
	CRR073309	Second white 1	17.402
	CRR073310	Second white 2	20.259
	CRR073311	Second white 3	13.952
	CRR073312	Silver flowering 1	17.805
	CRR073313	Silver flowering 2	13.899
	CRR073314	Silver flowering 3	11.095
	CRR073315	Gold flowering 1	22.537
	CRR073316	Gold flowering 2	27.005
	CRR073317	Gold flowering 3	22.340
	CRR073318	Tawny withering 1	25.355
	CRR073319	Tawny withering 2	28.281
	CRR073320	Tawny withering 3	25.822