Detail information of GWHGAAZE030337


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002530478.10conserved hypothetical protein [Ricinus communis]
COGYP_001957953.11E-43hypothetical protein Aasi_0854
Swissprottr|Q9LM25|HRD3A_ARATH0ERAD-associated E3 ubiquitin-protein ligase component HRD3A {ECO:0000305} (Precursor)
trEMBLtr|B9SWV9|B9SWV9_RICCO0Putative uncharacterized protein {ECO:0000313|EMBL:EEF31901.1}
TAIR10AT1G18260.10HCP-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4198121141988415+
GWHAAZE00000009mRNA4198121141988415+
GWHAAZE00000009exon4198121141981750+
GWHAAZE00000009exon4198280741983295+
GWHAAZE00000009exon4198478341984998+
GWHAAZE00000009exon4198644741986770+
GWHAAZE00000009exon4198685341987095+
GWHAAZE00000009exon4198819441988415+
GWHAAZE00000009CDS4198121141981750+
GWHAAZE00000009CDS4198280741983295+
GWHAAZE00000009CDS4198478341984998+
GWHAAZE00000009CDS4198644741986770+
GWHAAZE00000009CDS4198685341987095+
GWHAAZE00000009CDS4198819441988415+
Transcript Sequence

Network for GWHGAAZE030337

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08238.13Sel11311563.1
PF08238.13Sel12482833.20E-06
PF08238.13Sel12863181.60E-05
PF08238.13Sel13223530.00014
PF08238.13Sel13603916.30E-05
PF08238.13Sel13974161.60E+02
PF08238.13Sel15105330.93
PF08238.13Sel15455763.30E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14026SEL1, SEL1L Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.477
SRR3591706second leaf22.435
SRR3591707mature leaf21.377
SRR3591708Shoot apex24.391
SRR3591709Stem27.254
SRR3591710White floral bud42.081
SRR3591711White flower34.602
SRR3591712Green floral bud33.620
SRR3591713Yellow flower42.666
SRP173429 SRR8316895Juvenile bud stage 18.116
SRR8316896Juvenile bud stage 23.296
SRR8316897Juvenile bud stage 9.420
SRR8316894Third green stage 10.529
SRR8316900Third green stage 32.570
SRR8316901Third green stage 30.881
SRR8316898Complete white stage 25.193
SRR8316899Complete white stage 34.833
SRR8316903Complete white stage 44.559
SRR8316902Silver flowering stage29.998
SRR8316904Silver flowering stage44.879
SRR8316905Silver flowering stage22.120
SRR8316906Gold flowering stage 74.155
SRR8316907Gold flowering stage 71.605
SRR8316908Gold flowering stage 65.996
SRP132670SRR6706286Control43.740
SRR6706287Light intensity 50%41.626
SRR6706288Light intensity 20%39.683
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.728
CNS0095593Slightly white alabastrum(diploid) 226.965
CNS0095594Slightly white alabastrum(diploid) 326.793
CNS0095595Whole white alabastrum(diploid) 229.842
CNS0095596Whole white alabastrum(diploid) 326.837
CNS0095597Whole white alabastrum(diploid) 424.604
CNS0095598Silvery flower (diploied) 134.502
CNS0095599Silvery flower (diploied) 230.455
CNS0095600Silvery flower (diploied) 354.893
CNS0095601Golden flower (diploid) 127.711
CNS0095602Golden flower (diploid) 277.098
CNS0095603Golden flower (diploid) 377.064
CNS0095604Slightly white alabastrum(tetraploid) 123.390
CNS0095605Slightly white alabastrum(tetraploid) 220.409
CNS0095606Slightly white alabastrum(tetraploid) 334.731
CNS0095607Whole white alabastrum(tetraploid) 121.677
CNS0095608Whole white alabastrum(tetraploid) 220.394
CNS0095609Whole white alabastrum(tetraploid) 335.837
CNS0095610Silvery flower (tetraploid) 149.915
CNS0095611Silvery flower (tetraploid) 242.207
CNS0095612Silvery flower (tetraploid) 332.601
CNS0095613Golden flower (tetraploid) 127.197
CNS0095614Golden flower (tetraploid) 248.270
CNS0095615Golden flower (tetraploid) 351.367
CRA001975CRR073297Stem 131.276
CRR073298Stem 228.559
CRR073299Stem 332.738
CRR073300Leaf 133.206
CRR073301Leaf 233.148
CRR073302Leaf 327.804
CRR073303Juvenile bud 134.479
CRR073304Juvenile bud 232.152
CRR073305Juvenile bud 335.253
CRR073306Third green 132.701
CRR073307Third green 229.474
CRR073308Third green 331.493
CRR073309Second white 125.687
CRR073310Second white 226.969
CRR073311Second white 332.746
CRR073312Silver flowering 157.966
CRR073313Silver flowering 272.736
CRR073314Silver flowering 388.140
CRR073315Gold flowering 119.665
CRR073316Gold flowering 232.773
CRR073317Gold flowering 324.965
CRR073318Tawny withering 134.429
CRR073319Tawny withering 225.279
CRR073320Tawny withering 326.042