Gene detail

Detail information of GWHGAAZE030326

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279127.2	0	PREDICTED: probable inactive receptor kinase At1g48480 [Vitis vinifera]
COG	YP_004579826.1	3E-18	hypothetical protein
Swissprot	tr\|Q9LP77\|Y1848_ARATH	0	Probable inactive receptor kinase At1g48480 (Precursor)
trEMBL	tr\|F6GSP3\|F6GSP3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43298.1}
TAIR10	AT1G48480.1	2E-175	receptor-like kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	41758623	41761188	+
GWHAAZE00000009	mRNA	41758623	41761188	+
GWHAAZE00000009	exon	41758623	41759889	+
GWHAAZE00000009	exon	41760575	41761188	+
GWHAAZE00000009	CDS	41758623	41759889	+
GWHAAZE00000009	CDS	41760575	41761188	+

Transcript Sequence
>GWHTAAZE030360 ATGCTCCTCTTCATATTCCACCTCTTTCTTTCTCTTCCCGCCGGAAAATCAGATCTAACATCCGACAGAGCCGCCCTCTTGTCCCTCCGGTCATCCGTCGGCGGCCGTACCCTCCTCTGGAACACCACCTACCAGTCCCCCTGCCAATGGTCCGGCATCCAATGCGACAACAACAACCAACAAGTCACCGCCATCCGCCTCCCGGCAGCCTCTCTATCCGGTAACATCCCAGTCGGCACCATCGGAAACCTAACCCACCTCAAAACCCTTAGCCTCCGTCTCAACTCCCTCTCCGGCCTCCTCCCCTCCGACCTACCCACCTCCCTCCGCAACCTCTACCTTCAGGGCAACCGCTTCTCCGGCCAGTTACCTGACTTTTTGTTCGGCCTTAAGTCCCTCGTCCGGTTGAACCTCGCTGGAAATGAGTTTTCCGGCGAGATCTCAACTGGGTTTAATAGTTTATCCCGGTTGAAGACACTTTACTTAGAGAATAATCAGCTTAGTGGCATAATCCCGGACATAAAGCTTACTAGTTTGAGACAGTTTAATGTTTCTTTTAATCAGTTGAATGGGTCTGTTCCTTTAGACCTTGAATCAATGCCGAGGGATTCATTTTTGGGGAATTCTCTATGTGGTGGTCCTCTCAAGGCTTGTTCGAGCAATGGTTCGAGCAATGGAGCTATACCGGTTATTGAAAATATGAGGAAGAAAAAGAAAAAATTATCTGCTGGTGCTATTGTTGGGATTGTAGTTGGGTCTATTCTAGGTTTAGTATTACTTCTTTTGGTTTTATTTCTGTGTTGTCGAAAGAAGAGGAGTAAGAAAATGAGTTCTGTTGATGTTGCAACAATGAGGAATTCAGAAATGGAGATTGTGGGGGATAAAGATAAACCATCCATTGAGGAGGGGAAAAGTGGGGAGAATTTGGGCGACGGGACGGGGGAAATTGGAAAGAAATTGGTGTTTTTTGGGAATGCAGATAGAGTGTTTGATTTGGAGGAATTGTTGAGGGCTTCGGCTGAGGTTTTGGGGAAGGGGAGTTTTGGGACTGTGTATAAGGCGGTTTTGGATTCGGGGATTGTGGTGGCTGTGAAGAGATTGAAGGAGGTGACCATTTCTGAGAATGAATTCAGAGGGAAGATTGAGGAAGTGGGAGCTATGGATCATGAGAATTTGGTGCCTCTCAGGGCTTACTATTATAGCACAGAGGAAAAGCTTCTTGTTTATGATTACATGTCAATGGGGAGCTTATCTGCACTTCTGCATGGAAACAAAGCAGCTAGTAGGAGTCGACTGAATTGGGAAACCAGATGCGGCATTGCCCTTGGAACAGCCCGTGGAATCGAATATCTCCATTCCCAAGGCCCCATTGTATCCCACGGAAACATCAAATCGTCCAATATCCTCCTCACAAGATCCTACAATCCCCGTCTCTCAGACTTCGGCCTGGCACACCTCGTGGGATCCACATCCAATCCCAACCGCGTGGCTGGCTATCGCGCACCGGAGGTGACCGACCTTCGCAAAGTGTCCCAAAAGGCCGATGTCTATAGCTTTGGCGTACTTCTATTAGAGCTCCTTACAGGCAAATCACCAACTAATGCCCTCTTAAATGGGCAAGCAGTTGACCTCCCAAGATGGGTTCAGTCCATAGTTAGAGAGGAGTGGAGCAATGAGGTTTTTGACCGTGAGCTCGACCCGGAACGTAACGTGGACGAGGAAATGGTTCAGTTTTTGCAGATTGCGATAGATTGTGCGGCTCAGTATCCTGATAACCGGCCTTCGATGCCGGAGGTCACCGGTCGGATCGAGGAGCTCCGTCGGTTGAGCGTGCGAGGGGATCAAGATTCACAGCCTGATATTGTCAAGGAAACATATTAA

Network for GWHGAAZE030326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	21	56	9.50E-07
PF13855.7	LRR_8	108	167	2.50E-07
PF00069.26	Pkinase	340	599	4.50E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.934
	SRR3591706	second leaf	82.872
	SRR3591707	mature leaf	17.316
	SRR3591708	Shoot apex	40.948
	SRR3591709	Stem	28.550
	SRR3591710	White floral bud	6.640
	SRR3591711	White flower	5.154
	SRR3591712	Green floral bud	7.566
	SRR3591713	Yellow flower	0.533
SRP173429	SRR8316895	Juvenile bud stage	13.820
	SRR8316896	Juvenile bud stage	12.143
	SRR8316897	Juvenile bud stage	4.574
	SRR8316894	Third green stage	5.584
	SRR8316900	Third green stage	5.908
	SRR8316901	Third green stage	6.266
	SRR8316898	Complete white stage	1.157
	SRR8316899	Complete white stage	7.502
	SRR8316903	Complete white stage	2.082
	SRR8316902	Silver flowering stage	2.078
	SRR8316904	Silver flowering stage	2.696
	SRR8316905	Silver flowering stage	1.387
	SRR8316906	Gold flowering stage	4.282
	SRR8316907	Gold flowering stage	1.907
	SRR8316908	Gold flowering stage	3.505
SRP132670	SRR6706286	Control	4.085
	SRR6706287	Light intensity 50%	4.746
	SRR6706288	Light intensity 20%	4.933
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.462
	CNS0095593	Slightly white alabastrum(diploid) 2	8.586
	CNS0095594	Slightly white alabastrum(diploid) 3	9.256
	CNS0095595	Whole white alabastrum(diploid) 2	5.449
	CNS0095596	Whole white alabastrum(diploid) 3	1.680
	CNS0095597	Whole white alabastrum(diploid) 4	4.524
	CNS0095598	Silvery flower (diploied) 1	11.770
	CNS0095599	Silvery flower (diploied) 2	8.142
	CNS0095600	Silvery flower (diploied) 3	5.203
	CNS0095601	Golden flower (diploid) 1	5.933
	CNS0095602	Golden flower (diploid) 2	4.942
	CNS0095603	Golden flower (diploid) 3	4.175
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.677
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.003
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.944
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.335
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.646
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.469
	CNS0095610	Silvery flower (tetraploid) 1	1.848
	CNS0095611	Silvery flower (tetraploid) 2	2.617
	CNS0095612	Silvery flower (tetraploid) 3	3.580
	CNS0095613	Golden flower (tetraploid) 1	0.658
	CNS0095614	Golden flower (tetraploid) 2	1.591
	CNS0095615	Golden flower (tetraploid) 3	1.070
CRA001975	CRR073297	Stem 1	18.587
	CRR073298	Stem 2	16.681
	CRR073299	Stem 3	19.235
	CRR073300	Leaf 1	8.240
	CRR073301	Leaf 2	9.031
	CRR073302	Leaf 3	7.797
	CRR073303	Juvenile bud 1	3.899
	CRR073304	Juvenile bud 2	4.000
	CRR073305	Juvenile bud 3	5.913
	CRR073306	Third green 1	14.545
	CRR073307	Third green 2	5.825
	CRR073308	Third green 3	9.561
	CRR073309	Second white 1	21.152
	CRR073310	Second white 2	14.668
	CRR073311	Second white 3	17.767
	CRR073312	Silver flowering 1	18.657
	CRR073313	Silver flowering 2	24.761
	CRR073314	Silver flowering 3	18.313
	CRR073315	Gold flowering 1	21.057
	CRR073316	Gold flowering 2	21.544
	CRR073317	Gold flowering 3	30.125
	CRR073318	Tawny withering 1	25.571
	CRR073319	Tawny withering 2	11.541
	CRR073320	Tawny withering 3	33.393