Detail information of GWHGAAZE030324


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002279640.20PREDICTED: protein transport protein Sec24-like At4g32640 [Vitis vinifera]
COGYP_002760035.12E-73putative potassium transport system protein Kup
Swissprottr|Q9M081|SC24B_ARATH0Protein transport protein Sec24-like At4g32640
trEMBLtr|E0CT66|E0CT66_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI20515.3}
TAIR10AT4G32640.20Sec23/Sec24 protein transport family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4163204841658017-
GWHAAZE00000009mRNA4163204841658017-
GWHAAZE00000009exon4165708541658017-
GWHAAZE00000009exon4165644341656538-
GWHAAZE00000009exon4165580141656028-
GWHAAZE00000009exon4165524141655315-
GWHAAZE00000009exon4165497541655073-
GWHAAZE00000009exon4165405941654170-
GWHAAZE00000009exon4165357841653705-
GWHAAZE00000009exon4165328641653405-
GWHAAZE00000009exon4165235741652437-
GWHAAZE00000009exon4165157141651648-
GWHAAZE00000009exon4165133641651428-
GWHAAZE00000009exon4165076341650817-
GWHAAZE00000009exon4164962441649700-
GWHAAZE00000009exon4164911041649181-
GWHAAZE00000009exon4164889341648976-
GWHAAZE00000009exon4164690741647026-
GWHAAZE00000009exon4164616941646246-
GWHAAZE00000009exon4164590041646038-
GWHAAZE00000009exon4164561341645777-
GWHAAZE00000009exon4164489341645038-
GWHAAZE00000009exon4164463441644813-
GWHAAZE00000009exon4164396441644052-
GWHAAZE00000009exon4164365941643710-
GWHAAZE00000009exon4163610941636334-
GWHAAZE00000009exon4163578041636022-
GWHAAZE00000009exon4163539841635451-
GWHAAZE00000009exon4163523841635288-
GWHAAZE00000009exon4163464941634909-
GWHAAZE00000009exon4163450941634561-
GWHAAZE00000009exon4163355741633680-
GWHAAZE00000009exon4163322341633477-
GWHAAZE00000009exon4163204841633120-
GWHAAZE00000009CDS4165708541658017-
GWHAAZE00000009CDS4165644341656538-
GWHAAZE00000009CDS4165580141656028-
GWHAAZE00000009CDS4165524141655315-
GWHAAZE00000009CDS4165497541655073-
GWHAAZE00000009CDS4165405941654170-
GWHAAZE00000009CDS4165357841653705-
GWHAAZE00000009CDS4165328641653405-
GWHAAZE00000009CDS4165235741652437-
GWHAAZE00000009CDS4165157141651648-
GWHAAZE00000009CDS4165133641651428-
GWHAAZE00000009CDS4165076341650817-
GWHAAZE00000009CDS4164962441649700-
GWHAAZE00000009CDS4164911041649181-
GWHAAZE00000009CDS4164889341648976-
GWHAAZE00000009CDS4164690741647026-
GWHAAZE00000009CDS4164616941646246-
GWHAAZE00000009CDS4164590041646038-
GWHAAZE00000009CDS4164561341645777-
GWHAAZE00000009CDS4164489341645038-
GWHAAZE00000009CDS4164463441644813-
GWHAAZE00000009CDS4164396441644052-
GWHAAZE00000009CDS4164365941643710-
GWHAAZE00000009CDS4163610941636334-
GWHAAZE00000009CDS4163578041636022-
GWHAAZE00000009CDS4163539841635451-
GWHAAZE00000009CDS4163523841635288-
GWHAAZE00000009CDS4163464941634909-
GWHAAZE00000009CDS4163450941634561-
GWHAAZE00000009CDS4163355741633680-
GWHAAZE00000009CDS4163322341633477-
GWHAAZE00000009CDS4163204841633120-
Transcript Sequence

Network for GWHGAAZE030324

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04810.16zf-Sec23_Sec244865241.50E-14
PF04811.16Sec23_trunk5618019.70E-78
PF08033.13Sec23_BS8128661.30E-10
PF04815.16Sec23_helical8789739.90E-21
PF00626.23Gelsolin99910679.00E-05
PF02705.17K_trans111217012.20E-152
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14007SEC24 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0071805biological_processpotassium ion transmembrane transport
GO:0006886biological_processintracellular protein transport
GO:0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016020cellular_componentmembrane
GO:0030127cellular_componentCOPII vesicle coat
GO:0015079molecular_functionpotassium ion transmembrane transporter activity
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.036
SRR3591706second leaf23.000
SRR3591707mature leaf16.656
SRR3591708Shoot apex33.036
SRR3591709Stem45.884
SRR3591710White floral bud42.806
SRR3591711White flower45.540
SRR3591712Green floral bud47.425
SRR3591713Yellow flower38.501
SRP173429 SRR8316895Juvenile bud stage 31.631
SRR8316896Juvenile bud stage 43.892
SRR8316897Juvenile bud stage 21.355
SRR8316894Third green stage 19.205
SRR8316900Third green stage 49.323
SRR8316901Third green stage 47.389
SRR8316898Complete white stage 11.012
SRR8316899Complete white stage 35.592
SRR8316903Complete white stage 30.914
SRR8316902Silver flowering stage17.462
SRR8316904Silver flowering stage27.359
SRR8316905Silver flowering stage11.573
SRR8316906Gold flowering stage 35.679
SRR8316907Gold flowering stage 37.394
SRR8316908Gold flowering stage 35.142
SRP132670SRR6706286Control46.869
SRR6706287Light intensity 50%46.986
SRR6706288Light intensity 20%48.913
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.840
CNS0095593Slightly white alabastrum(diploid) 226.581
CNS0095594Slightly white alabastrum(diploid) 324.608
CNS0095595Whole white alabastrum(diploid) 227.039
CNS0095596Whole white alabastrum(diploid) 327.492
CNS0095597Whole white alabastrum(diploid) 423.812
CNS0095598Silvery flower (diploied) 122.826
CNS0095599Silvery flower (diploied) 223.814
CNS0095600Silvery flower (diploied) 348.126
CNS0095601Golden flower (diploid) 118.333
CNS0095602Golden flower (diploid) 245.211
CNS0095603Golden flower (diploid) 342.650
CNS0095604Slightly white alabastrum(tetraploid) 139.349
CNS0095605Slightly white alabastrum(tetraploid) 232.211
CNS0095606Slightly white alabastrum(tetraploid) 353.800
CNS0095607Whole white alabastrum(tetraploid) 130.336
CNS0095608Whole white alabastrum(tetraploid) 230.461
CNS0095609Whole white alabastrum(tetraploid) 350.958
CNS0095610Silvery flower (tetraploid) 153.355
CNS0095611Silvery flower (tetraploid) 249.798
CNS0095612Silvery flower (tetraploid) 348.440
CNS0095613Golden flower (tetraploid) 123.841
CNS0095614Golden flower (tetraploid) 244.484
CNS0095615Golden flower (tetraploid) 345.167
CRA001975CRR073297Stem 143.206
CRR073298Stem 238.958
CRR073299Stem 331.896
CRR073300Leaf 147.027
CRR073301Leaf 243.676
CRR073302Leaf 334.273
CRR073303Juvenile bud 136.196
CRR073304Juvenile bud 228.443
CRR073305Juvenile bud 349.545
CRR073306Third green 119.703
CRR073307Third green 215.686
CRR073308Third green 322.277
CRR073309Second white 117.363
CRR073310Second white 221.488
CRR073311Second white 324.878
CRR073312Silver flowering 125.811
CRR073313Silver flowering 225.251
CRR073314Silver flowering 326.898
CRR073315Gold flowering 16.509
CRR073316Gold flowering 214.077
CRR073317Gold flowering 39.731
CRR073318Tawny withering 123.667
CRR073319Tawny withering 218.792
CRR073320Tawny withering 325.486