Gene detail

Detail information of GWHGAAZE030323

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007036940.1	0	Pyrimidine 1 isoform 1 [Theobroma cacao]
COG	YP_005446576.1	8E-138	dihydropyrimidine dehydrogenase
Swissprot	tr\|A5B4K1\|RS3A1_VITVI	2E-106	40S ribosomal protein S3a-1 {ECO:0000255\|HAMAP-Rule:MF_03122}
trEMBL	tr\|A0A061FW13\|A0A061FW13_THECC	0	Pyrimidine 1 isoform 1 {ECO:0000313\|EMBL:EOY21441.1}
TAIR10	AT3G17810.1	0	pyrimidine 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	41613985	41625014	+
GWHAAZE00000009	mRNA	41613985	41625014	+
GWHAAZE00000009	exon	41613985	41614257	+
GWHAAZE00000009	exon	41615295	41615558	+
GWHAAZE00000009	exon	41615860	41616030	+
GWHAAZE00000009	exon	41616532	41616644	+
GWHAAZE00000009	exon	41616745	41616931	+
GWHAAZE00000009	exon	41619119	41619228	+
GWHAAZE00000009	exon	41619344	41619463	+
GWHAAZE00000009	exon	41622247	41622294	+
GWHAAZE00000009	exon	41622412	41622517	+
GWHAAZE00000009	exon	41623501	41623638	+
GWHAAZE00000009	exon	41623721	41623744	+
GWHAAZE00000009	exon	41624251	41624451	+
GWHAAZE00000009	exon	41624569	41625014	+
GWHAAZE00000009	CDS	41613985	41614257	+
GWHAAZE00000009	CDS	41615295	41615558	+
GWHAAZE00000009	CDS	41615860	41616030	+
GWHAAZE00000009	CDS	41616532	41616644	+
GWHAAZE00000009	CDS	41616745	41616931	+
GWHAAZE00000009	CDS	41619119	41619228	+
GWHAAZE00000009	CDS	41619344	41619463	+
GWHAAZE00000009	CDS	41622247	41622294	+
GWHAAZE00000009	CDS	41622412	41622517	+
GWHAAZE00000009	CDS	41623501	41623638	+
GWHAAZE00000009	CDS	41623721	41623744	+
GWHAAZE00000009	CDS	41624251	41624451	+
GWHAAZE00000009	CDS	41624569	41624664	+
GWHAAZE00000009	three_prime_UTR	41624665	41625014	+

Transcript Sequence
>GWHTAAZE030357 ATGGCGTCAATTGGTTTGAATCGGATCGGCGGGAGAAACTCGGCGGTTGAGTTTCCGATGAGTCGGAATCGGCGGCCGAGTTTTACCGGCAAGGGGAGAGTTGGGTTCAAGGTGTTTGCTTCGGATACTCAAGCGGAGCCCGACCTGAGTGTCACTGTCAATGGGTTGCACATGCCGAATCCGTTTGTTATCGGATCAGGTCCTCCGGGGACCAATTATAAGGTCATGAAGAAGGCTTTTGATGAAGGATGGGGTGCAGTCATTGCCAAAACTGTGTCATTAGATGCTGAAAAGGTCATTAATGTAACTCCTCGATATGCTCGACTGCGAGCTGGATCAAACGGCTCGGCCAAAGGACCAATTATCGGCTGGGAAAATATCGAACTTATAAGTGACCGGCCTCTTGAAGTAATGTTAAAGGAATTCAAGCAGTTGAAGGAAGAGTATCCAGATAGGATACTTATTGCTTCAATCATGGAGGAGTATAACAAAGCTGCCTGGCAAGAACTTATTGATCGGGTCGAACAAGCTGGAGTAGATGCCATTGAAATAAATTTCTCATGTCCTCACGGTATGCCGGAGCGTAAAATGGGTGCTGCAGTTGGACAAGATTGTGCACTGTTAGAAGAAGTTTGTGGATGGGCTAATGCAAAGGCCACAGTTCCAGTTTGGGCAAAGATGACTCCAAACATCACTGACATTACAATGCCAGCTAGGGTGGCTCTTAAATCAGGGTGTGAGGGTGTATCTGCTATCAACACAATCATGAGTGTGATGGGAATCAATCTCAAGACCTTACATCCGGAACCTTGTGTTGAGGGATACTCAACTCCTGGGGGCTATTCTTGCAAGGCAGTCCGACCTATTGCACTTGGAAAAGTGATGAACATTGCAAAAATGATGAAGTCAGAATTTGGAGATAAGGAACTTTCCCTTTCTGGTATAGGAGGTGTTGAGACAGGCAGTGATGCTGCTGAATTCATTCTTCTTGGAGCTAACACGGTTCAGGTCTGCACTGGAGTGATGATGCATGGGTATGATTTGGTAGGAAAACTCTGCTCCGAGCTCAAGGACTTCATGAAAATGCACAACTTTTCATCCATTGAAGATTTCAGAGGGGTTTCACTTCAGTACTTCACGACACACACGGATTTGGTGAGACGACAACAAGAAGCCATTAAACAGAGGAGAGCCATCAAGCAAGGCTTACAGTCCGACAAAGACTGGACGGGTGATGGGAAGAACAAGAGGATTTCCAAGGGAAAGAAAGGAGGAAAGAAGAAGGCGGCTGATCCCTTCTCTAAGAAGGATTGGTATGATATTAAGGCACCTTCAGTCTTTGAACTTCGAAATGTCGGCAAGACCCTTGTCAGTAGGACTCAGGGCACAAAGATTGCTTCCGAAGGACTCAAACATAGAGTGTTTGAGGTCAGTCTGGCTGATCTTCAGAAGGATGAGGATCAGGCATACAGGAAGATCCGACTCAGGGCAGAGGATGTGCAAGGGAAGAACGTACTCACAAACTTCTGGGGAATGGACTTTACAACAGACAAGATCCGCCGCAAAATGGTAGAAATTATGAGGAACCAGGCAACTTCATGTGATCTCAAGGAGCTGGTGGCAAAGTTCATCCCAGAGTCAATTGGCCGAGAAATTGAGAAGGCAACTTCAAGCATCTTCCCCCTGCAGAATGTTTTCATTCGAAAAGTCAAGATTTTGAAGGCTCCCAAATTTGATCTTGGCAAGTTGATGGAGGTTCATGGTGACTATTCCGACGATGTTGGTGTGAAGATGGAGAGGCCAGCTGAGGAAACAATGGTCGAGGCGGAAACTGAAGTTGTTGGAGCTTAAGAGATTATCTTTATGTTATCAAATTAAATCAGTTGCATTAGTTTTAGTGTTCTATATTGGGTTTTCATTGCCATTTAATTTGGATAAAAATTTTGCTTTGTTAAAGGGATTTCTCTTGGCTTGCTATTTCTGGACAAGTCTTGTATGCTTTAATTGGACAAGTGTACTTTTTTATAGCACTTTTTGCATCATCTGGCTTCTATTTCATGCTTGTACTCGTACCTTTTAATTGTAGTTGATGGAATTTGTGAATTGTTGTTAGTGATGAAGTGTACACAAAACGCACCTATACATCTCTCTATATGCATAGATATGGCTGTGTATGCAAGTAAAAAGCTAGGTTTTGTTAA

Network for GWHGAAZE030323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01180.22	DHO_dh	49	360	3.50E-33
PF01015.19	Ribosomal_S3Ae	425	520	1.50E-33
PF01015.19	Ribosomal_S3Ae	518	576	4.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00207	DPYD	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		beta-Alanine metabolism	map00410
		Pantothenate and CoA biosynthesis	map00770
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006412	biological_process	translation
GO:0005737	cellular_component	cytoplasm
GO:0005840	cellular_component	ribosome
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0003824	molecular_function	catalytic activity
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	289.291
	SRR3591706	second leaf	154.202
	SRR3591707	mature leaf	124.991
	SRR3591708	Shoot apex	347.063
	SRR3591709	Stem	186.000
	SRR3591710	White floral bud	169.632
	SRR3591711	White flower	190.707
	SRR3591712	Green floral bud	261.159
	SRR3591713	Yellow flower	159.419
SRP173429	SRR8316895	Juvenile bud stage	126.598
	SRR8316896	Juvenile bud stage	170.084
	SRR8316897	Juvenile bud stage	86.066
	SRR8316894	Third green stage	70.873
	SRR8316900	Third green stage	243.297
	SRR8316901	Third green stage	234.577
	SRR8316898	Complete white stage	90.056
	SRR8316899	Complete white stage	279.776
	SRR8316903	Complete white stage	121.094
	SRR8316902	Silver flowering stage	89.476
	SRR8316904	Silver flowering stage	108.774
	SRR8316905	Silver flowering stage	56.770
	SRR8316906	Gold flowering stage	209.092
	SRR8316907	Gold flowering stage	190.251
	SRR8316908	Gold flowering stage	195.099
SRP132670	SRR6706286	Control	333.805
	SRR6706287	Light intensity 50%	323.666
	SRR6706288	Light intensity 20%	345.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	201.357
	CNS0095593	Slightly white alabastrum(diploid) 2	238.188
	CNS0095594	Slightly white alabastrum(diploid) 3	187.615
	CNS0095595	Whole white alabastrum(diploid) 2	203.874
	CNS0095596	Whole white alabastrum(diploid) 3	222.144
	CNS0095597	Whole white alabastrum(diploid) 4	173.371
	CNS0095598	Silvery flower (diploied) 1	148.728
	CNS0095599	Silvery flower (diploied) 2	146.785
	CNS0095600	Silvery flower (diploied) 3	222.093
	CNS0095601	Golden flower (diploid) 1	140.608
	CNS0095602	Golden flower (diploid) 2	207.777
	CNS0095603	Golden flower (diploid) 3	201.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	206.419
	CNS0095605	Slightly white alabastrum(tetraploid) 2	198.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	260.333
	CNS0095607	Whole white alabastrum(tetraploid) 1	139.557
	CNS0095608	Whole white alabastrum(tetraploid) 2	135.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	224.790
	CNS0095610	Silvery flower (tetraploid) 1	204.402
	CNS0095611	Silvery flower (tetraploid) 2	211.654
	CNS0095612	Silvery flower (tetraploid) 3	197.841
	CNS0095613	Golden flower (tetraploid) 1	153.028
	CNS0095614	Golden flower (tetraploid) 2	189.166
	CNS0095615	Golden flower (tetraploid) 3	195.996
CRA001975	CRR073297	Stem 1	223.972
	CRR073298	Stem 2	222.831
	CRR073299	Stem 3	233.670
	CRR073300	Leaf 1	274.993
	CRR073301	Leaf 2	274.465
	CRR073302	Leaf 3	309.211
	CRR073303	Juvenile bud 1	306.686
	CRR073304	Juvenile bud 2	253.990
	CRR073305	Juvenile bud 3	276.997
	CRR073306	Third green 1	155.288
	CRR073307	Third green 2	136.094
	CRR073308	Third green 3	135.591
	CRR073309	Second white 1	179.724
	CRR073310	Second white 2	139.407
	CRR073311	Second white 3	120.944
	CRR073312	Silver flowering 1	113.647
	CRR073313	Silver flowering 2	125.373
	CRR073314	Silver flowering 3	112.251
	CRR073315	Gold flowering 1	122.215
	CRR073316	Gold flowering 2	138.111
	CRR073317	Gold flowering 3	130.763
	CRR073318	Tawny withering 1	242.339
	CRR073319	Tawny withering 2	198.392
	CRR073320	Tawny withering 3	202.818