Detail information of GWHGAAZE030321


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007036962.13.5681E-179Uncharacterized protein isoform 2 [Theobroma cacao]
Swissprottr|Q9SKD0|BPC1_ARATH1E-67Protein BASIC PENTACYSTEINE1
trEMBLtr|A0A061FWL1|A0A061FWL1_THECC1E-179Uncharacterized protein isoform 2 {ECO:0000313|EMBL:EOY21463.1}
TAIR10AT3G17800.11E-110Protein of unknown function (DUF760)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4155351641561771-
GWHAAZE00000009mRNA4155351641561771-
GWHAAZE00000009exon4155351641553978-
GWHAAZE00000009exon4155416241554395-
GWHAAZE00000009exon4155702641557835-
GWHAAZE00000009exon4155848641558778-
GWHAAZE00000009exon4156140741561562-
GWHAAZE00000009exon4156171641561771-
GWHAAZE00000009five_prime_UTR4156175541561771-
GWHAAZE00000009CDS4156171641561754-
GWHAAZE00000009CDS4156140741561562-
GWHAAZE00000009CDS4155848641558778-
GWHAAZE00000009CDS4155702641557835-
GWHAAZE00000009CDS4155416241554395-
GWHAAZE00000009CDS4155351641553978-
Transcript Sequence

Network for GWHGAAZE030321

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05542.12DUF7601602868.40E-23
PF06217.13GAGA_bind5126642.00E-82
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyBBR-BPC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf73.859
SRR3591706second leaf96.660
SRR3591707mature leaf89.163
SRR3591708Shoot apex105.619
SRR3591709Stem51.479
SRR3591710White floral bud48.906
SRR3591711White flower57.070
SRR3591712Green floral bud65.211
SRR3591713Yellow flower57.206
SRP173429 SRR8316895Juvenile bud stage 47.021
SRR8316896Juvenile bud stage 60.462
SRR8316897Juvenile bud stage 27.623
SRR8316894Third green stage 23.503
SRR8316900Third green stage 78.694
SRR8316901Third green stage 70.543
SRR8316898Complete white stage 34.413
SRR8316899Complete white stage 97.963
SRR8316903Complete white stage 42.943
SRR8316902Silver flowering stage30.049
SRR8316904Silver flowering stage38.123
SRR8316905Silver flowering stage22.321
SRR8316906Gold flowering stage 68.577
SRR8316907Gold flowering stage 71.384
SRR8316908Gold flowering stage 66.254
SRP132670SRR6706286Control70.316
SRR6706287Light intensity 50%73.417
SRR6706288Light intensity 20%86.691
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.864
CNS0095593Slightly white alabastrum(diploid) 236.370
CNS0095594Slightly white alabastrum(diploid) 331.285
CNS0095595Whole white alabastrum(diploid) 235.901
CNS0095596Whole white alabastrum(diploid) 339.089
CNS0095597Whole white alabastrum(diploid) 430.853
CNS0095598Silvery flower (diploied) 150.923
CNS0095599Silvery flower (diploied) 246.213
CNS0095600Silvery flower (diploied) 390.680
CNS0095601Golden flower (diploid) 151.894
CNS0095602Golden flower (diploid) 282.812
CNS0095603Golden flower (diploid) 384.742
CNS0095604Slightly white alabastrum(tetraploid) 155.457
CNS0095605Slightly white alabastrum(tetraploid) 246.316
CNS0095606Slightly white alabastrum(tetraploid) 385.464
CNS0095607Whole white alabastrum(tetraploid) 129.163
CNS0095608Whole white alabastrum(tetraploid) 230.931
CNS0095609Whole white alabastrum(tetraploid) 377.430
CNS0095610Silvery flower (tetraploid) 179.928
CNS0095611Silvery flower (tetraploid) 2111.719
CNS0095612Silvery flower (tetraploid) 3100.166
CNS0095613Golden flower (tetraploid) 167.990
CNS0095614Golden flower (tetraploid) 284.684
CNS0095615Golden flower (tetraploid) 3112.696
CRA001975CRR073297Stem 1101.380
CRR073298Stem 287.441
CRR073299Stem 3127.195
CRR073300Leaf 184.991
CRR073301Leaf 290.616
CRR073302Leaf 3111.632
CRR073303Juvenile bud 1113.708
CRR073304Juvenile bud 298.400
CRR073305Juvenile bud 395.960
CRR073306Third green 165.806
CRR073307Third green 250.274
CRR073308Third green 351.958
CRR073309Second white 187.584
CRR073310Second white 263.916
CRR073311Second white 351.013
CRR073312Silver flowering 149.241
CRR073313Silver flowering 253.779
CRR073314Silver flowering 342.515
CRR073315Gold flowering 1179.968
CRR073316Gold flowering 2205.358
CRR073317Gold flowering 3200.173
CRR073318Tawny withering 153.870
CRR073319Tawny withering 233.237
CRR073320Tawny withering 351.440