Gene detail

Detail information of GWHGAAZE030269

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043083.1	0	Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
COG	YP_642814.1	2E-28	serine/threonine protein kinase
Swissprot	tr\|A5A7I7\|CDPK4_SOLTU	0	Calcium-dependent protein kinase 4
trEMBL	tr\|A0A061E1R7\|A0A061E1R7_THECC	0	Calmodulin-domain protein kinase 5 isoform 1 {ECO:0000313\|EMBL:EOX98915.1}
TAIR10	AT2G17290.1	0	Calcium-dependent protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40832402	40836048	+
GWHAAZE00000009	mRNA	40832402	40836048	+
GWHAAZE00000009	exon	40832402	40833176	+
GWHAAZE00000009	exon	40833395	40833538	+
GWHAAZE00000009	exon	40833620	40833772	+
GWHAAZE00000009	exon	40833908	40834023	+
GWHAAZE00000009	exon	40834733	40834900	+
GWHAAZE00000009	exon	40835268	40835492	+
GWHAAZE00000009	exon	40835929	40836048	+
GWHAAZE00000009	CDS	40832402	40833176	+
GWHAAZE00000009	CDS	40833395	40833538	+
GWHAAZE00000009	CDS	40833620	40833772	+
GWHAAZE00000009	CDS	40833908	40834023	+
GWHAAZE00000009	CDS	40834733	40834900	+
GWHAAZE00000009	CDS	40835268	40835492	+
GWHAAZE00000009	CDS	40835929	40836048	+

Transcript Sequence
>GWHTAAZE030303 ATGGGCAACACATGCAGTGGATCATTTGGAGCAAAAAAAATTCAGGGCTACAGTCAGCCCGAAGACCAAACTAACTCCAAGCGCAACCCTTCTTCCGGCCATTCTAACAACTCTTCCGATTACTCACCCAGCAATTTGAACTCTCAACAGCTCATTTCCCAAGACCCTAACCCTAACCCTAACCCCCAAAACAAAAAGGACAATAATTTGCCTCTCGTTAGTCCCAAGAAAGAGGGCAGCATGAGCCGCCACAGCAATAACCAACCTTTTTACGTACTTGGTCACAAGACTGCAAACATTCGTGATCTTTATACATTGGGCCGTAAATTAGGACAGGGCCAATTTGGTACTACTTATTTATGCACCGAGATTTCCACTGGGATTGAGTATGCTTGCAAATCCATTTCGAAGAGGAAGTTGATTTCCAAAGAAGATGTGGAGGATGTTAGGAGAGAGATTCAGATAATGCACCATTTGGCAGGTCACAAGAATATTGTCACCATTAAGGGTGCATACGAGGACCCTTTGTATGTTCATATTGTGATGGAGGTTTGTAATGGGGGAGAATTGTTTGACAGAATTATTCAGAGGGGACATTATACTGAGAGGAAGGCCGCTGAATTGACAAGGATAATCGTGGGGGTTGTTGAGGCATGCCACTCTCTTGGGGTTATGCATAGAGATTTGAAGCCTGAGAATTTCTTGTTGGTTAACAAGGACGACGATTTCTCCCTCAAAGCTATTGATTTCGGGCTCTCAGTTTTCTTCAATCCAGGTCAAGTGTTCACAGATGTGGTTGGAAGCCCATACTATGTGGCTCCCGAGGTTCTTTTGAAGCGTTATGGCCCAGAAGCAGATGTATGGACTGCAGGGGTTATACTATATATATTGCTAAGTGGTGTACCACCTTTTTGGGCCGAAACACAACAAGGAATCTTTAATGCGGTTTTGAAAGGATACATTGACTTTGACTCAGACCCATGGCCCTTGATATCTGAAAGTGCAAAGGATCTTATTAGGAAGATGCTATGCTCTGAACCTGCTGAGCGTTTAACTGCTCACGAAGTTTTATGTCATCCTTGGATTTGTGAAAATGGTGTTGCCCCTGATAGAGCACTGGATCCAGCTGTACTTTCTCGTCTCAAGCAATTCTCTGCGATGAATAAGTTAAAGAAGATGGCTTTACGGGTAATAGCCGAAAGCTTGTCAGAAGAGGAAATTGCTGGTTTGAGAGAAATGTTCAAGGCAATGGACACTGATAACAGTGGTGCAATCACATTTGATGAACTGAAAGCTGGTTTAAGAAAATATGGCTCTACTTTAAAGGATACTGAGATACGTGACCTCATGGATGCGGCCGATGTGGACAACAGTGGGACAATCGATTATGGAGAATTCGTAACCGCAACAATTCACCTTAACAAACTAGAACGCGAGGAACATCTCATGGCGGCATTTCGATACTTCGACAAGGATGGAAGTGGTTATATTACAATTGATGAGCTTCAACAAGCTTGCACAGAACATAACATGACTGATGTACGACTCGAAGATATCATCAGGGAAGTTGATCAAGATAACGATGGGAGGATCGATTATGGTGAATTTGTCGCTATGATGCAAAACAATCCAGGAGTGGGACGACGAACAATGCGAAACAGTCTAAATATTAGCATGAGAGACGCACCTGGAGCTCTTTAG

Network for GWHGAAZE030269

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	104	362	6.80E-73
PF13499.7	EF-hand_7	410	470	7.90E-12
PF13499.7	EF-hand_7	479	541	4.50E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	131.301
	SRR3591706	second leaf	61.139
	SRR3591707	mature leaf	52.796
	SRR3591708	Shoot apex	81.806
	SRR3591709	Stem	104.150
	SRR3591710	White floral bud	84.437
	SRR3591711	White flower	92.511
	SRR3591712	Green floral bud	92.480
	SRR3591713	Yellow flower	69.707
SRP173429	SRR8316895	Juvenile bud stage	60.689
	SRR8316896	Juvenile bud stage	76.000
	SRR8316897	Juvenile bud stage	37.607
	SRR8316894	Third green stage	34.850
	SRR8316900	Third green stage	98.148
	SRR8316901	Third green stage	88.992
	SRR8316898	Complete white stage	42.867
	SRR8316899	Complete white stage	139.285
	SRR8316903	Complete white stage	67.299
	SRR8316902	Silver flowering stage	49.768
	SRR8316904	Silver flowering stage	63.196
	SRR8316905	Silver flowering stage	29.247
	SRR8316906	Gold flowering stage	95.035
	SRR8316907	Gold flowering stage	86.867
	SRR8316908	Gold flowering stage	103.931
SRP132670	SRR6706286	Control	93.393
	SRR6706287	Light intensity 50%	95.478
	SRR6706288	Light intensity 20%	96.534
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.140
	CNS0095593	Slightly white alabastrum(diploid) 2	53.422
	CNS0095594	Slightly white alabastrum(diploid) 3	50.501
	CNS0095595	Whole white alabastrum(diploid) 2	51.342
	CNS0095596	Whole white alabastrum(diploid) 3	42.962
	CNS0095597	Whole white alabastrum(diploid) 4	49.306
	CNS0095598	Silvery flower (diploied) 1	73.254
	CNS0095599	Silvery flower (diploied) 2	61.185
	CNS0095600	Silvery flower (diploied) 3	114.867
	CNS0095601	Golden flower (diploid) 1	61.184
	CNS0095602	Golden flower (diploid) 2	117.698
	CNS0095603	Golden flower (diploid) 3	112.642
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.997
	CNS0095606	Slightly white alabastrum(tetraploid) 3	126.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.066
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.318
	CNS0095610	Silvery flower (tetraploid) 1	94.704
	CNS0095611	Silvery flower (tetraploid) 2	87.751
	CNS0095612	Silvery flower (tetraploid) 3	68.798
	CNS0095613	Golden flower (tetraploid) 1	51.398
	CNS0095614	Golden flower (tetraploid) 2	79.579
	CNS0095615	Golden flower (tetraploid) 3	86.752
CRA001975	CRR073297	Stem 1	82.046
	CRR073298	Stem 2	77.700
	CRR073299	Stem 3	78.761
	CRR073300	Leaf 1	87.869
	CRR073301	Leaf 2	65.682
	CRR073302	Leaf 3	69.230
	CRR073303	Juvenile bud 1	66.098
	CRR073304	Juvenile bud 2	60.861
	CRR073305	Juvenile bud 3	74.547
	CRR073306	Third green 1	40.979
	CRR073307	Third green 2	39.763
	CRR073308	Third green 3	48.145
	CRR073309	Second white 1	27.190
	CRR073310	Second white 2	38.815
	CRR073311	Second white 3	32.823
	CRR073312	Silver flowering 1	26.691
	CRR073313	Silver flowering 2	28.488
	CRR073314	Silver flowering 3	26.003
	CRR073315	Gold flowering 1	43.767
	CRR073316	Gold flowering 2	76.632
	CRR073317	Gold flowering 3	48.651
	CRR073318	Tawny withering 1	94.167
	CRR073319	Tawny withering 2	80.390
	CRR073320	Tawny withering 3	104.660