Detail information of GWHGAAZE030267


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIU48469.11.8593E-128homoserine kinase, partial [Lactuca sativa]
COGYP_676708.17E-50homoserine kinase
Swissprottr|Q8L7R2|KHSE_ARATH3E-116Homoserine kinase (Precursor)
trEMBLtr|A0A097PKD8|A0A097PKD8_LACSA7E-129Homoserine kinase {ECO:0000313|EMBL:AIU48469.1} (Fragment)
TAIR10AT2G17265.13E-93homoserine kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4081088640811626+
GWHAAZE00000009mRNA4081088640811626+
GWHAAZE00000009exon4081088640811626+
GWHAAZE00000009CDS4081088640811626+
Transcript Sequence

Network for GWHGAAZE030267

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00288.27GHMP_kinases_N13781.00E-10
PF08544.14GHMP_kinases_C1412182.80E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00872thrB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260

Gene Ontology

GO term OntologyName
GO:0006566biological_processthreonine metabolic process
GO:0005524molecular_functionATP binding
GO:0004413molecular_functionhomoserine kinase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE030267.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055606570Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.138
SRR3591706second leaf11.326
SRR3591707mature leaf7.936
SRR3591708Shoot apex23.250
SRR3591709Stem9.083
SRR3591710White floral bud13.614
SRR3591711White flower12.106
SRR3591712Green floral bud34.096
SRR3591713Yellow flower9.405
SRP173429 SRR8316895Juvenile bud stage 17.735
SRR8316896Juvenile bud stage 26.446
SRR8316897Juvenile bud stage 18.286
SRR8316894Third green stage 10.288
SRR8316900Third green stage 28.354
SRR8316901Third green stage 30.080
SRR8316898Complete white stage 4.833
SRR8316899Complete white stage 26.512
SRR8316903Complete white stage 11.047
SRR8316902Silver flowering stage3.485
SRR8316904Silver flowering stage3.712
SRR8316905Silver flowering stage3.039
SRR8316906Gold flowering stage 7.578
SRR8316907Gold flowering stage 9.827
SRR8316908Gold flowering stage 11.360
SRP132670SRR6706286Control34.460
SRR6706287Light intensity 50%32.140
SRR6706288Light intensity 20%33.552
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.890
CNS0095593Slightly white alabastrum(diploid) 238.597
CNS0095594Slightly white alabastrum(diploid) 340.378
CNS0095595Whole white alabastrum(diploid) 231.738
CNS0095596Whole white alabastrum(diploid) 332.144
CNS0095597Whole white alabastrum(diploid) 429.680
CNS0095598Silvery flower (diploied) 114.294
CNS0095599Silvery flower (diploied) 213.785
CNS0095600Silvery flower (diploied) 313.808
CNS0095601Golden flower (diploid) 110.560
CNS0095602Golden flower (diploid) 216.111
CNS0095603Golden flower (diploid) 314.493
CNS0095604Slightly white alabastrum(tetraploid) 149.190
CNS0095605Slightly white alabastrum(tetraploid) 247.220
CNS0095606Slightly white alabastrum(tetraploid) 363.390
CNS0095607Whole white alabastrum(tetraploid) 131.010
CNS0095608Whole white alabastrum(tetraploid) 221.603
CNS0095609Whole white alabastrum(tetraploid) 345.806
CNS0095610Silvery flower (tetraploid) 116.554
CNS0095611Silvery flower (tetraploid) 217.828
CNS0095612Silvery flower (tetraploid) 313.051
CNS0095613Golden flower (tetraploid) 114.099
CNS0095614Golden flower (tetraploid) 225.209
CNS0095615Golden flower (tetraploid) 312.378
CRA001975CRR073297Stem 124.317
CRR073298Stem 225.811
CRR073299Stem 330.012
CRR073300Leaf 129.335
CRR073301Leaf 229.469
CRR073302Leaf 329.051
CRR073303Juvenile bud 135.055
CRR073304Juvenile bud 220.007
CRR073305Juvenile bud 341.720
CRR073306Third green 16.241
CRR073307Third green 26.163
CRR073308Third green 37.339
CRR073309Second white 14.374
CRR073310Second white 25.816
CRR073311Second white 32.590
CRR073312Silver flowering 13.700
CRR073313Silver flowering 22.247
CRR073314Silver flowering 34.338
CRR073315Gold flowering 15.595
CRR073316Gold flowering 27.569
CRR073317Gold flowering 310.406
CRR073318Tawny withering 136.423
CRR073319Tawny withering 228.943
CRR073320Tawny withering 336.776