Gene detail

Detail information of GWHGAAZE030255

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282473.2	0	PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9SII8\|DSK2B_ARATH	0	Ubiquitin domain-containing protein DSK2b
trEMBL	tr\|F6I0T0\|F6I0T0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60546.1}
TAIR10	AT2G17200.1	1E-109	ubiquitin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40616460	40622429	+
GWHAAZE00000009	mRNA	40616460	40622429	+
GWHAAZE00000009	exon	40616460	40616702	+
GWHAAZE00000009	exon	40618061	40618831	+
GWHAAZE00000009	exon	40619142	40619353	+
GWHAAZE00000009	exon	40619442	40619555	+
GWHAAZE00000009	exon	40620289	40620347	+
GWHAAZE00000009	exon	40620732	40620766	+
GWHAAZE00000009	exon	40621548	40621576	+
GWHAAZE00000009	exon	40621867	40621984	+
GWHAAZE00000009	exon	40622281	40622429	+
GWHAAZE00000009	five_prime_UTR	40616460	40616467	+
GWHAAZE00000009	CDS	40616468	40616702	+
GWHAAZE00000009	CDS	40618061	40618831	+
GWHAAZE00000009	CDS	40619142	40619353	+
GWHAAZE00000009	CDS	40619442	40619555	+
GWHAAZE00000009	CDS	40620289	40620347	+
GWHAAZE00000009	CDS	40620732	40620766	+
GWHAAZE00000009	CDS	40621548	40621576	+
GWHAAZE00000009	CDS	40621867	40621984	+
GWHAAZE00000009	CDS	40622281	40622429	+

Transcript Sequence
>GWHTAAZE030289 ATCTGAAAATGGGTGCCGATGGAGATTCAACCGAGTCCAGCGTGGTGGTTGGTGGTGGTGAAGATGTAACCCTCAACATCCGATGCACAAATGGATCCAAATTCTCTGTACGGACCTCCCTCGGTTCCACGGTTGAGGCTTTCAAAGCTGTTCTAGCTCAGAACTGCGATGTACCTGCTGATCAGCAGCGATTGATTTACAAAGGCCGGATCTTGAAGGGTGACCAAACCCTAGACAGCTACGGTCTGCAGGCAGATCACACTGTCCATATGGTGCGTGGTTCTGCTCCCACTTCTTCAACTCCCCCTCCTGCTACTCCCAATGTTGCAAACCCTAATACTACTACAGGCCAAGCAGAAGGTGTTAATTCCAATGGAGGGGACTTTGGAGGCGCTGGCCTTGGGGCATCTCTATTTCCTGGTCTCGGTTTCGGTGCACCAGGTGGCACTGGCGCACCTGGTTTATTTGGAGCTGGCCTGCCAGAGTTTGAACAAGTGCAGCAACAATTAACTCAGAATCCAAACATGATGAGAGAAATAATAAACACACCCGCCATTCAGAACTTAATGAATAACCCTGAATTAATGCGAAGCTTGATTATGAGCAACCCTCAAATGCGTGAGATCATTGACCGTAATCCCGAGCTCGCTCATATTCTTAATGATCCCAGCATCCTTCGGCAGACATTGGAAGCTACAAGGAACCCTGAGCTCATGCGTGAGATGATGCGCAATACTGACAGAGCAATGAGTAATATTGAATCTTCGCCCGAGGGATTTAACATGCTGAGACGCATGTATGAAAATGTCCAGGAACCTTTTATGAATGCAACAACAATGGGCGGAGGAGGCACTGGAAACAATGCGGGATCGAATCCATTTGCCGCTCTTTTGGGGAATCAGGGTGGTGGGGCTCAAACCAGAGATGGATCTAACAATTCTACCACTGCTGGGTCTGAAGTGGGGGCCACAGCTCCAAATAGTAATCCACTCCCCAACCCATGGAATGCTGGAGGAGGTTCACAAACAAACAGTGGTTCACGGTCAAACCCTACTGGAGATGCTAGGTTACCAGGTATTGGTGGGTTAGGAGGGCTTGGTCTTCCAGATTTGGACCGCTCATTGGGCGGCATGCCCGACCCTGCAGTAATGAATCAGCTATTGCAAAATCCGGCTATTTCCCAGATGATGCAAAGCATGCTTTCCAACCCCCAGTATATGAATCAGTTTCTCAGCTCCAATCCTCAACTCCGTAGTATGCTTGATTTAAACCCTCAATTAAGAGAAATGATGCAAAATCCGGAAATTCTTCGTCAGATGACCTCTCCCGAAACAATGCAGCAAATGTTGTCTTTACATCAGTCACTTCTACCTCAGCTTAACCGACAGCAATCAACTCAGGTTCTCAGTTGGGACGTCCTGTCCCCTCTACCTTGGAACCAGGCCAGACTGGTGGGACTACAGGCCAGGTTAATACTATTAAAAAATGCAGGAACACAAAACAATGCGGGGCTGGACTTGTTGATGAATATGTTTGGCGGTCTTGGAGCTGGCGGTTTGAACGTTCCAAATACCCCTGATGTACCTCCAGAAGAACTTTATGCGACTCAACTGTCACAGCTCCAAGAAATGGGATTCTTTGATACCCAAGAGAATATAAGGGCACTTCGTGCTACATCGGGGAATGTGCATGCGGCTGTGGAGCGACTTTTAGGTAACCTAGGCCAGTAG

Network for GWHGAAZE030255

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	22	89	4.30E-19
PF00627.32	UBA	531	567	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04523	UBQLN, DSK2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	100.072
	SRR3591706	second leaf	72.116
	SRR3591707	mature leaf	65.073
	SRR3591708	Shoot apex	84.709
	SRR3591709	Stem	101.240
	SRR3591710	White floral bud	127.407
	SRR3591711	White flower	111.668
	SRR3591712	Green floral bud	106.676
	SRR3591713	Yellow flower	90.767
SRP173429	SRR8316895	Juvenile bud stage	58.451
	SRR8316896	Juvenile bud stage	88.548
	SRR8316897	Juvenile bud stage	38.198
	SRR8316894	Third green stage	32.536
	SRR8316900	Third green stage	97.335
	SRR8316901	Third green stage	98.339
	SRR8316898	Complete white stage	56.094
	SRR8316899	Complete white stage	144.668
	SRR8316903	Complete white stage	74.757
	SRR8316902	Silver flowering stage	54.872
	SRR8316904	Silver flowering stage	62.687
	SRR8316905	Silver flowering stage	30.126
	SRR8316906	Gold flowering stage	117.050
	SRR8316907	Gold flowering stage	106.491
	SRR8316908	Gold flowering stage	116.696
SRP132670	SRR6706286	Control	137.709
	SRR6706287	Light intensity 50%	132.821
	SRR6706288	Light intensity 20%	135.916
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	71.774
	CNS0095593	Slightly white alabastrum(diploid) 2	74.409
	CNS0095594	Slightly white alabastrum(diploid) 3	65.610
	CNS0095595	Whole white alabastrum(diploid) 2	73.171
	CNS0095596	Whole white alabastrum(diploid) 3	70.500
	CNS0095597	Whole white alabastrum(diploid) 4	71.147
	CNS0095598	Silvery flower (diploied) 1	72.528
	CNS0095599	Silvery flower (diploied) 2	68.300
	CNS0095600	Silvery flower (diploied) 3	118.957
	CNS0095601	Golden flower (diploid) 1	67.898
	CNS0095602	Golden flower (diploid) 2	98.488
	CNS0095603	Golden flower (diploid) 3	97.557
	CNS0095604	Slightly white alabastrum(tetraploid) 1	92.913
	CNS0095605	Slightly white alabastrum(tetraploid) 2	82.849
	CNS0095606	Slightly white alabastrum(tetraploid) 3	135.862
	CNS0095607	Whole white alabastrum(tetraploid) 1	81.949
	CNS0095608	Whole white alabastrum(tetraploid) 2	78.178
	CNS0095609	Whole white alabastrum(tetraploid) 3	117.596
	CNS0095610	Silvery flower (tetraploid) 1	132.359
	CNS0095611	Silvery flower (tetraploid) 2	134.425
	CNS0095612	Silvery flower (tetraploid) 3	129.652
	CNS0095613	Golden flower (tetraploid) 1	86.928
	CNS0095614	Golden flower (tetraploid) 2	118.679
	CNS0095615	Golden flower (tetraploid) 3	112.530
CRA001975	CRR073297	Stem 1	108.775
	CRR073298	Stem 2	102.709
	CRR073299	Stem 3	101.190
	CRR073300	Leaf 1	119.259
	CRR073301	Leaf 2	127.449
	CRR073302	Leaf 3	105.626
	CRR073303	Juvenile bud 1	118.231
	CRR073304	Juvenile bud 2	106.969
	CRR073305	Juvenile bud 3	161.147
	CRR073306	Third green 1	106.059
	CRR073307	Third green 2	91.882
	CRR073308	Third green 3	103.831
	CRR073309	Second white 1	88.287
	CRR073310	Second white 2	100.172
	CRR073311	Second white 3	89.178
	CRR073312	Silver flowering 1	86.869
	CRR073313	Silver flowering 2	89.521
	CRR073314	Silver flowering 3	84.425
	CRR073315	Gold flowering 1	68.030
	CRR073316	Gold flowering 2	89.039
	CRR073317	Gold flowering 3	56.431
	CRR073318	Tawny withering 1	91.900
	CRR073319	Tawny withering 2	89.211
	CRR073320	Tawny withering 3	88.273