Gene detail

Detail information of GWHGAAZE030243

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010941399.1	2.5769E-131	PREDICTED: chitinase 1-like isoform X1 [Elaeis guineensis]
COG	YP_003125181.1	2E-52	chitinase
Swissprot	tr\|P29059\|CHI3_TOBAC	5E-128	Endochitinase 3 (Precursor)
trEMBL	tr\|Q8VXF1\|Q8VXF1_MUSAC	5E-131	Putative chitinase {ECO:0000313\|EMBL:CAC81811.1}
TAIR10	AT3G12500.1	3E-98	basic chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40407559	40411426	-
GWHAAZE00000009	mRNA	40407559	40411426	-
GWHAAZE00000009	exon	40411424	40411426	-
GWHAAZE00000009	exon	40408826	40409243	-
GWHAAZE00000009	exon	40408589	40408742	-
GWHAAZE00000009	exon	40407559	40407955	-
GWHAAZE00000009	CDS	40411424	40411426	-
GWHAAZE00000009	CDS	40408826	40409243	-
GWHAAZE00000009	CDS	40408589	40408742	-
GWHAAZE00000009	CDS	40407559	40407955	-

Transcript Sequence
>GWHTAAZE030277 ATGGTGGTGCCTCGGCAGAGCAATGTGGTCGCCAAGCTGGTGGTGCACTCTGCCCGGGTGGGCTTTGCTGCAGCGAATACGGGTGGTGCGGCAACACTGCCCCTTACTGCACCCTTCCCCGCTGCCAGAGCCAATGCTGGGGCTCTCCTTCGCCGCCACCACCCGTTGGACCACCACCACCCCCTACTCCCCCTGGCTACTCCTAGTGGTGGGGGCATTTCCGACATCATTACCCGCGAGCTGTTCGATGAAATGCTCAAGTACCGCAACGATCCCCGTTGCTACGCAGTAGGATTTTATACTTACGACGCTTTCATAACTGCGGCCGCTTATTTTCCTGGTTTTGGAACAACTGGTGACACTGCTACGCGTCAAAGGGAAATTGCTGCTTTTCTTGGCCAAACTTCTCATGAAACTACTGGGGGTTGGGCTACCACTGATGATGGCCCATACGCTTGGGGGTATTGCTTTCTTAGAGAAGTTTCGCCCGGTTGGAATTATTGTGTTCAAAATGTTCAGTACCCGTGTGCTCCAGGTCAAGCATATTATGGCCGAGGTCCCATTCAAATTTCATACAACTACAATTATGGGCCGGCTGGAGAGGTTATAGGTGAGGATCTACTTAACAATCCAGATATGGTAGCTACTGTTGCAATTGTTTCATTTAAGATAGCAATTTGGTTCTGGATGACTGAACAACTACCAAAGCCGTCGTGCCATGATGTTGTTATAGGAAGTTGGACCCCATCCATTGCCGACGTAGCAGCTGGCCGTCTTCCGGGGTATGGTGTTACCACAAACATTATAAATGGCGGCCTCGAATGTGGGATTGGTCCAGATTCCAGAGTTGAAGACCGTATTGGATTCTATAAAAGGTATTGTGACATGTTTGGAATTGATTATGGCGACAATCTTGACTGTGCCAATCAAAGGCCTTTTGGGAGTGTGGGTTTCTTGATGGATATCATGTAA

Network for GWHGAAZE030243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	76	307	5.40E-125

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20547	CHIB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.091
	SRR3591706	second leaf	43.922
	SRR3591707	mature leaf	275.596
	SRR3591708	Shoot apex	16.546
	SRR3591709	Stem	0.374
	SRR3591710	White floral bud	1.901
	SRR3591711	White flower	6.555
	SRR3591712	Green floral bud	1.142
	SRR3591713	Yellow flower	1.027
SRP173429	SRR8316895	Juvenile bud stage	0.198
	SRR8316896	Juvenile bud stage	0.042
	SRR8316897	Juvenile bud stage	3.813
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.249
	SRR8316901	Third green stage	0.122
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.775
	SRR8316903	Complete white stage	0.107
	SRR8316902	Silver flowering stage	0.038
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.031
	SRR8316906	Gold flowering stage	0.149
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.268
	SRR6706287	Light intensity 50%	0.089
	SRR6706288	Light intensity 20%	0.275
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.249
	CNS0095593	Slightly white alabastrum(diploid) 2	0.346
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.256
	CNS0095596	Whole white alabastrum(diploid) 3	0.284
	CNS0095597	Whole white alabastrum(diploid) 4	0.149
	CNS0095598	Silvery flower (diploied) 1	0.194
	CNS0095599	Silvery flower (diploied) 2	0.598
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.059
	CNS0095602	Golden flower (diploid) 2	0.063
	CNS0095603	Golden flower (diploid) 3	0.315
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.469
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.643
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.494
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.276
	CNS0095610	Silvery flower (tetraploid) 1	0.266
	CNS0095611	Silvery flower (tetraploid) 2	0.348
	CNS0095612	Silvery flower (tetraploid) 3	0.500
	CNS0095613	Golden flower (tetraploid) 1	0.223
	CNS0095614	Golden flower (tetraploid) 2	0.091
	CNS0095615	Golden flower (tetraploid) 3	0.106
CRA001975	CRR073297	Stem 1	0.418
	CRR073298	Stem 2	0.384
	CRR073299	Stem 3	0.241
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.272
	CRR073302	Leaf 3	0.164
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.068
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.041
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.048
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.108
	CRR073317	Gold flowering 3	0.007
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.283