Gene detail

Detail information of GWHGAAZE030229

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279474.1	0	PREDICTED: serine/threonine-protein kinase CDL1-like isoform X1 [Vitis vinifera]
COG	YP_001710557.1	4E-17	serine/threonine-protein kinase
Swissprot	tr\|Q9LV48\|PERK1_ARATH	1E-53	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|F6I0T4\|F6I0T4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60550.1}
TAIR10	AT1G21590.1	5E-63	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40259305	40262689	+
GWHAAZE00000009	mRNA	40259305	40262689	+
GWHAAZE00000009	exon	40259305	40259580	+
GWHAAZE00000009	exon	40259690	40259799	+
GWHAAZE00000009	exon	40260299	40261103	+
GWHAAZE00000009	exon	40261578	40261814	+
GWHAAZE00000009	exon	40261890	40262039	+
GWHAAZE00000009	exon	40262546	40262689	+
GWHAAZE00000009	CDS	40259305	40259580	+
GWHAAZE00000009	CDS	40259690	40259799	+
GWHAAZE00000009	CDS	40260299	40261103	+
GWHAAZE00000009	CDS	40261578	40261814	+
GWHAAZE00000009	CDS	40261890	40262039	+
GWHAAZE00000009	CDS	40262546	40262689	+

Transcript Sequence
>GWHTAAZE030263 GATGCTACCGAAACATTGAAATCCACTTTGTTCATAATAATGTTTTTCGGAAACGGAAGAATCTTGTCACGTTCATGGACAAGGAAACTGAATAATCACAGAACAATAATCGTGGGCCTGAAATCCGATAGTTCCGGCAGAGAAATGTTACTCCGTCTACTCGCTCTGTTTGCAATGCCAGGTGACAATGTGCTTGCTGTTCATGTTGAAGAACCAAATGATACCTTTGATCCAAACACCTTTCACCTCCACGAAGATCTCTGCAAATCCAAGCAGGTGGATTTTCATGTTAAGATCTGTACAGGCCACTCTTACATAATCGAATTGAGCCATCAAGTACGGTTGAACTTTGCTACTATACTCGCACTCGGTTGCAGCTCTCGCTGGCCTAAAGATTCATCAGTTTCCAAAAGCCTTAAAGCACTGCCTCCCACTTGCTCTCTTTTGGTAATGGATAATAGAGGAAGAATTCTAATTCAAAAGCAGGGAACTTCCCAACCAGGTTCTGCAAATAAATCCCTTCAATCTACTCAGTCTTGTTTATCAAAATACGCTTACGCTACTTGTGATCAATTAGGCAGCGACCAGTTTAAAAAATCAGTGTCAATGCCATGTTCCTCAACATTATATTCATTACTAAATAATGAATCTATGGAGCTGCAGGGAGCTAAGCAGACACTACAGCTCCCTCACTTTGTTTCGCAGAATATGTTCAATAAATTGTCTAAGATAGAAGCAAAAGGAACTTGCAGGCGCTTTAAGTTGGAAGAACTCAAATGTGCAACTAATAATTTTAGTCCTGAATTTTTGATTGGAGAGAGTGGGAAGAATAGTGTTTACCAAGCCAAGCTAGAGAATGGGCAGGCTGCAGCAGTGAAAGTTTTTATAACTACGGAGTCTTCAGAGGAGGTTTTATTTCAAGAAGTGGAAATTTTGAGTGGTTTGAAACATGAAAATGTAATTTGGCTTATTGGGTATTGTTATTGTATAGAGATGAATGCAGTTGTTTACAATCTGCAAAAGGAAAGCTTGAAGCGAAAATTGAAAGAGCTTATATGGAGTGAGAGGATGAGGGTTGCAATTGGTGTGGCTAAGGCATTGGATTACCTCCATTCTTGCATCCCTCCAGTCATTCACGGAGATGTAAAATCATCTAGCATTCTTCTCTCTGATAACAATTGCACACCACAACTATCAGATTTTGGAGCAGCAACTGTAGATCGACAGACTCAGCAAATTTCAACATATGGAAAGCCATTAAATGTTGTTGGGACTCTTGGATACATGGCCCCGGAGTACGTGATCTATGGCAAAGTTAATGAGAAGATAGATGTGTATTCTTATGGAGTTGTGCTCCTAGAACTCATCACCGGGAAGGAAGCTATACAAAATAACCCGGAATCCACTCATGAAAGCTTAGTACTTTGGGCAAGATCTTTTCTCCGTTGTGGGCTTTATGAGTGCCTTATTGATCCTCAGCTAAATGAAGACAACAACAAGGAAGAAATAAAACTGATGATGGTTGCGGCACGCCTCTGCCTATTGCATTCATCTTCCAGGAGGCCAACAATGAAAACGATCCTGAGGTTGTTTGAGGAGCCAGAGTACTGGCTAAAGATGCAGAGGAAGAGAGAGGAGCTCCTTAACGAAATTAGTACGAATGGTGAAACTGGGCAATATACGGATGATAATTCAGACAAAAATATGGTGATAGACAACTAG

Network for GWHGAAZE030229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	271	528	6.00E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.178
	SRR3591706	second leaf	14.215
	SRR3591707	mature leaf	3.011
	SRR3591708	Shoot apex	4.010
	SRR3591709	Stem	0.815
	SRR3591710	White floral bud	2.289
	SRR3591711	White flower	0.853
	SRR3591712	Green floral bud	4.223
	SRR3591713	Yellow flower	0.040
SRP173429	SRR8316895	Juvenile bud stage	6.026
	SRR8316896	Juvenile bud stage	6.926
	SRR8316897	Juvenile bud stage	2.031
	SRR8316894	Third green stage	4.919
	SRR8316900	Third green stage	15.626
	SRR8316901	Third green stage	14.460
	SRR8316898	Complete white stage	2.329
	SRR8316899	Complete white stage	15.489
	SRR8316903	Complete white stage	3.839
	SRR8316902	Silver flowering stage	1.023
	SRR8316904	Silver flowering stage	1.304
	SRR8316905	Silver flowering stage	0.520
	SRR8316906	Gold flowering stage	0.814
	SRR8316907	Gold flowering stage	0.494
	SRR8316908	Gold flowering stage	0.285
SRP132670	SRR6706286	Control	15.290
	SRR6706287	Light intensity 50%	15.390
	SRR6706288	Light intensity 20%	16.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.296
	CNS0095593	Slightly white alabastrum(diploid) 2	4.494
	CNS0095594	Slightly white alabastrum(diploid) 3	2.841
	CNS0095595	Whole white alabastrum(diploid) 2	3.246
	CNS0095596	Whole white alabastrum(diploid) 3	4.865
	CNS0095597	Whole white alabastrum(diploid) 4	3.137
	CNS0095598	Silvery flower (diploied) 1	2.492
	CNS0095599	Silvery flower (diploied) 2	1.682
	CNS0095600	Silvery flower (diploied) 3	1.215
	CNS0095601	Golden flower (diploid) 1	1.793
	CNS0095602	Golden flower (diploid) 2	1.144
	CNS0095603	Golden flower (diploid) 3	1.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.557
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.471
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.842
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.596
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.709
	CNS0095610	Silvery flower (tetraploid) 1	1.748
	CNS0095611	Silvery flower (tetraploid) 2	2.319
	CNS0095612	Silvery flower (tetraploid) 3	0.548
	CNS0095613	Golden flower (tetraploid) 1	0.407
	CNS0095614	Golden flower (tetraploid) 2	0.358
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	8.751
	CRR073298	Stem 2	6.909
	CRR073299	Stem 3	3.429
	CRR073300	Leaf 1	11.392
	CRR073301	Leaf 2	11.581
	CRR073302	Leaf 3	6.829
	CRR073303	Juvenile bud 1	5.525
	CRR073304	Juvenile bud 2	4.991
	CRR073305	Juvenile bud 3	5.590
	CRR073306	Third green 1	0.829
	CRR073307	Third green 2	0.182
	CRR073308	Third green 3	0.625
	CRR073309	Second white 1	0.029
	CRR073310	Second white 2	0.126
	CRR073311	Second white 3	0.096
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.808
	CRR073316	Gold flowering 2	0.887
	CRR073317	Gold flowering 3	0.745
	CRR073318	Tawny withering 1	1.079
	CRR073319	Tawny withering 2	0.169
	CRR073320	Tawny withering 3	0.646