Detail information of GWHGAAZE030224


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIZ00598.10geranylgeranyl pyrophosphate synthase [Panax notoginseng]
COGYP_007122344.13E-78geranylgeranyl pyrophosphate synthase
Swissprottr|Q39108|GGR_ARATH2E-137Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic (Precursor)
trEMBLtr|B9H1M5|B9H1M5_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEE86718.2}
TAIR10AT4G38460.12E-109geranylgeranyl reductase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4020314240208954-
GWHAAZE00000009mRNA4020314240208954-
GWHAAZE00000009exon4020861640208954-
GWHAAZE00000009exon4020314240203810-
GWHAAZE00000009CDS4020861640208954-
GWHAAZE00000009CDS4020314240203810-
Transcript Sequence

Network for GWHGAAZE030224

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00348.18polyprenyl_synt672611.40E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13789GGPS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf129.918
SRR3591706second leaf116.705
SRR3591707mature leaf103.239
SRR3591708Shoot apex129.432
SRR3591709Stem77.560
SRR3591710White floral bud186.313
SRR3591711White flower231.496
SRR3591712Green floral bud162.500
SRR3591713Yellow flower278.333
SRP173429 SRR8316895Juvenile bud stage 67.298
SRR8316896Juvenile bud stage 75.744
SRR8316897Juvenile bud stage 58.488
SRR8316894Third green stage 30.663
SRR8316900Third green stage 167.278
SRR8316901Third green stage 133.268
SRR8316898Complete white stage 77.963
SRR8316899Complete white stage 148.299
SRR8316903Complete white stage 101.692
SRR8316902Silver flowering stage115.072
SRR8316904Silver flowering stage133.339
SRR8316905Silver flowering stage100.465
SRR8316906Gold flowering stage 231.854
SRR8316907Gold flowering stage 295.886
SRR8316908Gold flowering stage 323.353
SRP132670SRR6706286Control196.852
SRR6706287Light intensity 50%186.665
SRR6706288Light intensity 20%188.960
CNP0000432CNS0095592Slightly white alabastrum(diploid) 183.303
CNS0095593Slightly white alabastrum(diploid) 270.935
CNS0095594Slightly white alabastrum(diploid) 361.239
CNS0095595Whole white alabastrum(diploid) 283.976
CNS0095596Whole white alabastrum(diploid) 399.733
CNS0095597Whole white alabastrum(diploid) 486.578
CNS0095598Silvery flower (diploied) 1124.619
CNS0095599Silvery flower (diploied) 2147.655
CNS0095600Silvery flower (diploied) 3253.792
CNS0095601Golden flower (diploid) 1146.577
CNS0095602Golden flower (diploid) 2209.528
CNS0095603Golden flower (diploid) 3201.829
CNS0095604Slightly white alabastrum(tetraploid) 197.950
CNS0095605Slightly white alabastrum(tetraploid) 2101.947
CNS0095606Slightly white alabastrum(tetraploid) 3142.777
CNS0095607Whole white alabastrum(tetraploid) 186.210
CNS0095608Whole white alabastrum(tetraploid) 2109.596
CNS0095609Whole white alabastrum(tetraploid) 3189.926
CNS0095610Silvery flower (tetraploid) 1355.760
CNS0095611Silvery flower (tetraploid) 2399.418
CNS0095612Silvery flower (tetraploid) 3397.383
CNS0095613Golden flower (tetraploid) 1437.798
CNS0095614Golden flower (tetraploid) 2373.254
CNS0095615Golden flower (tetraploid) 3417.522
CRA001975CRR073297Stem 1102.702
CRR073298Stem 296.300
CRR073299Stem 3131.512
CRR073300Leaf 1115.716
CRR073301Leaf 2122.251
CRR073302Leaf 3144.623
CRR073303Juvenile bud 1154.015
CRR073304Juvenile bud 2193.122
CRR073305Juvenile bud 3135.700
CRR073306Third green 1225.001
CRR073307Third green 2180.221
CRR073308Third green 3162.548
CRR073309Second white 1269.097
CRR073310Second white 2174.985
CRR073311Second white 3171.709
CRR073312Silver flowering 1178.087
CRR073313Silver flowering 2199.817
CRR073314Silver flowering 3175.817
CRR073315Gold flowering 1108.600
CRR073316Gold flowering 2108.792
CRR073317Gold flowering 396.635
CRR073318Tawny withering 150.017
CRR073319Tawny withering 242.418
CRR073320Tawny withering 351.177