Detail information of GWHGAAZE030223


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010646465.10PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Vitis vinifera]
COGYP_001958461.14E-42hypothetical protein Aasi_1443
Swissprottr|Q2MHE4|HT1_ARATH4E-81Serine/threonine-protein kinase HT1
trEMBLtr|D7U4Z3|D7U4Z3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI37812.3}
TAIR10AT4G38470.10ACT-like protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4015403240164254-
GWHAAZE00000009mRNA4015403240164254-
GWHAAZE00000009exon4016373940164254-
GWHAAZE00000009exon4016295340163067-
GWHAAZE00000009exon4016188240161952-
GWHAAZE00000009exon4016160340161698-
GWHAAZE00000009exon4016092740160981-
GWHAAZE00000009exon4016059240160702-
GWHAAZE00000009exon4015990540159955-
GWHAAZE00000009exon4015803640158202-
GWHAAZE00000009exon4015777940157886-
GWHAAZE00000009exon4015733740157410-
GWHAAZE00000009exon4015700640157181-
GWHAAZE00000009exon4015672640156821-
GWHAAZE00000009exon4015576340155843-
GWHAAZE00000009exon4015561640155669-
GWHAAZE00000009exon4015534940155483-
GWHAAZE00000009exon4015403240154352-
GWHAAZE00000009five_prime_UTR4016393340164254-
GWHAAZE00000009CDS4016373940163932-
GWHAAZE00000009CDS4016295340163067-
GWHAAZE00000009CDS4016188240161952-
GWHAAZE00000009CDS4016160340161698-
GWHAAZE00000009CDS4016092740160981-
GWHAAZE00000009CDS4016059240160702-
GWHAAZE00000009CDS4015990540159955-
GWHAAZE00000009CDS4015803640158202-
GWHAAZE00000009CDS4015777940157886-
GWHAAZE00000009CDS4015733740157410-
GWHAAZE00000009CDS4015700640157181-
GWHAAZE00000009CDS4015672640156821-
GWHAAZE00000009CDS4015576340155843-
GWHAAZE00000009CDS4015561640155669-
GWHAAZE00000009CDS4015534940155483-
GWHAAZE00000009CDS4015428140154352-
GWHAAZE00000009three_prime_UTR4015403240154280-
Transcript Sequence

Network for GWHGAAZE030223

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01842.26ACT1632092.30E-06
PF07714.18PK_Tyr_Ser-Thr2735227.10E-75
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyTKL-Pl-4

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.849
SRR3591706second leaf27.555
SRR3591707mature leaf25.586
SRR3591708Shoot apex11.920
SRR3591709Stem6.713
SRR3591710White floral bud29.844
SRR3591711White flower12.335
SRR3591712Green floral bud33.834
SRR3591713Yellow flower22.033
SRP173429 SRR8316895Juvenile bud stage 13.001
SRR8316896Juvenile bud stage 14.165
SRR8316897Juvenile bud stage 7.274
SRR8316894Third green stage 6.838
SRR8316900Third green stage 20.137
SRR8316901Third green stage 23.224
SRR8316898Complete white stage 12.402
SRR8316899Complete white stage 36.880
SRR8316903Complete white stage 21.267
SRR8316902Silver flowering stage3.583
SRR8316904Silver flowering stage5.244
SRR8316905Silver flowering stage3.055
SRR8316906Gold flowering stage 6.414
SRR8316907Gold flowering stage 5.499
SRR8316908Gold flowering stage 5.276
SRP132670SRR6706286Control14.201
SRR6706287Light intensity 50%15.173
SRR6706288Light intensity 20%16.175
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.745
CNS0095593Slightly white alabastrum(diploid) 213.205
CNS0095594Slightly white alabastrum(diploid) 39.814
CNS0095595Whole white alabastrum(diploid) 212.545
CNS0095596Whole white alabastrum(diploid) 313.270
CNS0095597Whole white alabastrum(diploid) 411.411
CNS0095598Silvery flower (diploied) 19.072
CNS0095599Silvery flower (diploied) 28.129
CNS0095600Silvery flower (diploied) 310.697
CNS0095601Golden flower (diploid) 18.718
CNS0095602Golden flower (diploid) 213.194
CNS0095603Golden flower (diploid) 313.015
CNS0095604Slightly white alabastrum(tetraploid) 113.468
CNS0095605Slightly white alabastrum(tetraploid) 211.208
CNS0095606Slightly white alabastrum(tetraploid) 320.152
CNS0095607Whole white alabastrum(tetraploid) 18.100
CNS0095608Whole white alabastrum(tetraploid) 28.260
CNS0095609Whole white alabastrum(tetraploid) 320.077
CNS0095610Silvery flower (tetraploid) 115.589
CNS0095611Silvery flower (tetraploid) 214.726
CNS0095612Silvery flower (tetraploid) 311.396
CNS0095613Golden flower (tetraploid) 16.891
CNS0095614Golden flower (tetraploid) 210.487
CNS0095615Golden flower (tetraploid) 336.497
CRA001975CRR073297Stem 122.797
CRR073298Stem 217.235
CRR073299Stem 314.972
CRR073300Leaf 133.463
CRR073301Leaf 225.407
CRR073302Leaf 322.138
CRR073303Juvenile bud 126.491
CRR073304Juvenile bud 226.526
CRR073305Juvenile bud 322.846
CRR073306Third green 11.770
CRR073307Third green 21.845
CRR073308Third green 32.993
CRR073309Second white 11.965
CRR073310Second white 23.266
CRR073311Second white 32.214
CRR073312Silver flowering 12.505
CRR073313Silver flowering 21.604
CRR073314Silver flowering 31.585
CRR073315Gold flowering 126.090
CRR073316Gold flowering 235.006
CRR073317Gold flowering 318.291
CRR073318Tawny withering 14.955
CRR073319Tawny withering 22.741
CRR073320Tawny withering 35.072