Gene detail

Detail information of GWHGAAZE030220

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092953.1	0	PREDICTED: 24-methylenesterol C-methyltransferase 2 [Sesamum indicum]
COG	YP_007124223.1	3E-26	methylase
Swissprot	tr\|Q39227\|SMT2_ARATH	0	24-methylenesterol C-methyltransferase 2
trEMBL	tr\|A0A022RD77\|A0A022RD77_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU37984.1}
TAIR10	AT1G20330.1	0	sterol methyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40076238	40077584	-
GWHAAZE00000009	mRNA	40076238	40077584	-
GWHAAZE00000009	exon	40076238	40076498	-
GWHAAZE00000009	exon	40076775	40077584	-
GWHAAZE00000009	CDS	40076775	40077584	-
GWHAAZE00000009	CDS	40076238	40076498	-

Transcript Sequence
>GWHTAAZE030254 ATGGACTCTCTCACTCTAGTTTGCACCGCCTCTCTTCTCGCCGGCGGCCTCTACTGGTTCATCTACATCCTTGGCTCCGCCGAACAAAAAGGCAAGCATGCCGTCAACCTCTCCGGAGGCTCCATCCACCGCGACGCCCTCGAAGATAACTACAAGCAGTACTGGTCCTTCTTCCGCCGCCCTAAGGAGATCGAAACCGCCGATAAAGTCCCCGCATTCGTAGACACCTTCTACAACCTCGTAACCGACATCTACGAATGGGGGTGGGGCCAGTCCTTCCACTTCTCCCCTTCAATCCCCGGGAAATCTCACCGCGACGCCACTCGGATCCACGAGGAAATGGCGGTCGATCTCCTTAACGTCAAGCCCGGGGATAAAATCCTCGACGCCGGCTGCGGAGTTGGCGGCCCGATGCGTGCAATTGCCGCCCACTCCGGTGCGAAAGTTGTCGGAATCACGATCAACGAGTATCAAGTTAATCGTGCGCGTATGCACAATTTGAAAGCTGGATTAGGCTCACTGTGTGAAGTTGTTTGCGGTAATTTCTTAGAGATGCCGTTCGAAGATAATAGCTTTGACGGTGCGTATTCTATTGAGGCTACTTGCCACGCGCCTAAGCTCGAAGAGGTTTACTCCGAGATCTACAGAGTTCTAAAGCCGGGGGCTTTGTATGTTTCTTACGAGTGGGTGACTACAGAGCATTTTAAAGCCGATGATCCGGAGCATGTTGAGGTTATTCACGGGATCGAGAGGGGAGATGCTTTGCCCGGATTGAGGAATTATACAGATATAGCCCAAATTGCGAAGAAGGTAGGGTTTGAAGTAGTGAAGGAGAAGGATTTAGCCAAGCCGCCGGCGAAGCCATGGTGGACTAGGCTTAAGATGGGGAGATTTGCTTACTGGAGGAACCACATATTAGTTACGGTGCTCTCGTGGCTGGGGATCGCGCCCAAGGGGACTGTTGATGTTCACGAGATGCTGTTTGTGACCGCCGATTATCTGACCAGAGGAGGGGAAACCGGAATTTTTACTCCAATGCACATGATTCTCTGCAGAAAGCCTGAGAATTAG

Network for GWHGAAZE030220

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08241.13	Methyltransf_11	128	224	6.00E-21
PF08498.11	Sterol_MT_C	291	355	3.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08242	E2.1.1.143	Biosynthesis of secondary metabolites	map01110
K08242	E2.1.1.143	Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0006694	biological_process	steroid biosynthetic process
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	138.042
	SRR3591706	second leaf	79.893
	SRR3591707	mature leaf	29.760
	SRR3591708	Shoot apex	83.342
	SRR3591709	Stem	84.290
	SRR3591710	White floral bud	118.978
	SRR3591711	White flower	72.931
	SRR3591712	Green floral bud	186.873
	SRR3591713	Yellow flower	28.868
SRP173429	SRR8316895	Juvenile bud stage	52.926
	SRR8316896	Juvenile bud stage	76.149
	SRR8316897	Juvenile bud stage	29.202
	SRR8316894	Third green stage	35.959
	SRR8316900	Third green stage	151.503
	SRR8316901	Third green stage	152.495
	SRR8316898	Complete white stage	65.314
	SRR8316899	Complete white stage	194.836
	SRR8316903	Complete white stage	96.966
	SRR8316902	Silver flowering stage	51.810
	SRR8316904	Silver flowering stage	54.276
	SRR8316905	Silver flowering stage	36.342
	SRR8316906	Gold flowering stage	87.740
	SRR8316907	Gold flowering stage	53.487
	SRR8316908	Gold flowering stage	54.592
SRP132670	SRR6706286	Control	196.483
	SRR6706287	Light intensity 50%	218.895
	SRR6706288	Light intensity 20%	235.958
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	89.762
	CNS0095593	Slightly white alabastrum(diploid) 2	127.558
	CNS0095594	Slightly white alabastrum(diploid) 3	79.995
	CNS0095595	Whole white alabastrum(diploid) 2	91.049
	CNS0095596	Whole white alabastrum(diploid) 3	95.751
	CNS0095597	Whole white alabastrum(diploid) 4	73.289
	CNS0095598	Silvery flower (diploied) 1	45.580
	CNS0095599	Silvery flower (diploied) 2	53.002
	CNS0095600	Silvery flower (diploied) 3	88.837
	CNS0095601	Golden flower (diploid) 1	29.165
	CNS0095602	Golden flower (diploid) 2	52.684
	CNS0095603	Golden flower (diploid) 3	51.811
	CNS0095604	Slightly white alabastrum(tetraploid) 1	102.898
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.414
	CNS0095606	Slightly white alabastrum(tetraploid) 3	194.336
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	121.478
	CNS0095610	Silvery flower (tetraploid) 1	49.380
	CNS0095611	Silvery flower (tetraploid) 2	55.089
	CNS0095612	Silvery flower (tetraploid) 3	117.222
	CNS0095613	Golden flower (tetraploid) 1	14.477
	CNS0095614	Golden flower (tetraploid) 2	30.689
	CNS0095615	Golden flower (tetraploid) 3	13.787
CRA001975	CRR073297	Stem 1	107.442
	CRR073298	Stem 2	115.403
	CRR073299	Stem 3	149.651
	CRR073300	Leaf 1	195.725
	CRR073301	Leaf 2	203.680
	CRR073302	Leaf 3	236.719
	CRR073303	Juvenile bud 1	219.265
	CRR073304	Juvenile bud 2	294.881
	CRR073305	Juvenile bud 3	261.512
	CRR073306	Third green 1	148.654
	CRR073307	Third green 2	152.416
	CRR073308	Third green 3	125.005
	CRR073309	Second white 1	70.867
	CRR073310	Second white 2	40.736
	CRR073311	Second white 3	19.075
	CRR073312	Silver flowering 1	9.015
	CRR073313	Silver flowering 2	12.167
	CRR073314	Silver flowering 3	11.984
	CRR073315	Gold flowering 1	49.025
	CRR073316	Gold flowering 2	52.128
	CRR073317	Gold flowering 3	50.862
	CRR073318	Tawny withering 1	110.632
	CRR073319	Tawny withering 2	76.855
	CRR073320	Tawny withering 3	99.299