Gene detail

Detail information of GWHGAAZE030216

Functional Annotation

Database	Orthologs	Annotation
Nr	EYU40452.1	hypothetical protein MIMGU_mgv1a005328mg [Erythranthe guttata]
COG	NP_127436.1	V-type ATP synthase subunit B
Swissprot	tr\|Q9SZN1\|VATB2_ARATH	V-type proton ATPase subunit B2
trEMBL	tr\|A0A022RJ66\|A0A022RJ66_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU40452.1}
TAIR10	AT4G38510.5	ATPase, V1 complex, subunit B protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40022525	40027301	+
GWHAAZE00000009	mRNA	40022525	40027301	+
GWHAAZE00000009	exon	40022525	40022578	+
GWHAAZE00000009	exon	40022699	40022797	+
GWHAAZE00000009	exon	40023919	40023978	+
GWHAAZE00000009	exon	40024562	40024673	+
GWHAAZE00000009	exon	40024771	40024979	+
GWHAAZE00000009	exon	40025069	40025197	+
GWHAAZE00000009	exon	40025317	40025454	+
GWHAAZE00000009	exon	40025643	40025793	+
GWHAAZE00000009	exon	40025908	40025990	+
GWHAAZE00000009	exon	40026434	40026481	+
GWHAAZE00000009	exon	40026587	40026640	+
GWHAAZE00000009	exon	40026927	40027010	+
GWHAAZE00000009	exon	40027119	40027301	+
GWHAAZE00000009	CDS	40022525	40022578	+
GWHAAZE00000009	CDS	40022699	40022797	+
GWHAAZE00000009	CDS	40023919	40023978	+
GWHAAZE00000009	CDS	40024562	40024673	+
GWHAAZE00000009	CDS	40024771	40024979	+
GWHAAZE00000009	CDS	40025069	40025197	+
GWHAAZE00000009	CDS	40025317	40025454	+
GWHAAZE00000009	CDS	40025643	40025793	+
GWHAAZE00000009	CDS	40025908	40025990	+
GWHAAZE00000009	CDS	40026434	40026481	+
GWHAAZE00000009	CDS	40026587	40026640	+
GWHAAZE00000009	CDS	40026927	40027010	+
GWHAAZE00000009	CDS	40027119	40027301	+

Transcript Sequence
>GWHTAAZE030250 TACAGAACTGTCTCCGGAGTTGCTGGACCTCTCGTTATCCTCGATAAAGTTAAGGGACCCAAGTATCAAGAAATCGTCAATATTCGTTTAGGAGATGGAACAACTAGACGTGGCCAAGTCCTGGAAGTTGATGGGGAAAAAGCTGTTGTTCAGGTTTTTGAAGGAACATCTGGAATTGACAACAAATTTACAACTGTGCAATTTACAGGAGAGGTGTTAAAAACTCCTGTCTCAATGGATATGCTTGGACGCATATTTAATGGTTCTGGCAAACCAATTGATAATGGCCCTCCAATTCTGCCTGAGGCTTACTTGGATATTTCTGGGAGTTCCATTAATCCTAGTGAGAGAACATATCCGGAAGAGATGATACAGACAGGGATCTCAACAATTGATGTCATGAACTCCATTGCTAGAGGACAAAAAATTCCTCTATTTTCTGCTGCTGGTCTCCCCCACAATGAAATAGCTGCCCAGATATGTCGTCAGGCTGGTTTGGTCAAGAGATTGGAGAAAACGGAAAACCTTCTCGAGGATGGGGAAGAGGAAAATTTTGCCATTGTGTTCGCAGCTATGGGGGTCAACATGGAGACAGCTCAGTTTTTCAAACGTGATTTCGAGGAAAATGGTTCAATGGAGAGAGTGACCCTTTTTCTAAATCTGGCCAATGACCCTACAATAGAACGTATTATTACTCCTCGTATTGCTCTGACAACTGCAGAGTATTTGGCATATGAATGTGGAAAGCACGTTCTTGTCATCTTAACTGATATGAGTTCTTATGCGGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGAAGGCGTGGTTATCCTGGTTATATGTATACTGATCTGGCAACAATCTATGAGCGTGCTGGGAGAATTGAAGGGCGAAAGGGCTCCATCACTCAAATTCCTATTTTGACTATGCCCAATGATGATATCACACATCCCACTCCTGATCTTACGGGTTATATTACTGAAGGGCAGATATATATTGACCGACAGCTTCAAAATCGTCAGATTTACCCACCAATTAATGTGCTACCATCCTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAGGGGATGACTCGCAGGGATCATTCTGATGTTTCCAACCAGCTATACGCAAATTATGCAATTGGGAAAGATGTTCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCTTCAGAGGACTTGTTATATTTGGAGTTCCTCGACAAATTCGAGAGGAAATTTGTTGCACAAGGTGCCTATGACACGCGAAATATTTTCCAGTCACTTGATTTAGCATGGACCCTGCTTCGAATATTCCCCCGAGAGCTTCTCCACCGTATACCAGCAAAGACTCTCGATGCATTCTACAGCCGAGACACAGCATAA

Network for GWHGAAZE030216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02874.24	ATP-synt_ab_N	4	70	1.10E-13
PF00006.26	ATP-synt_ab	127	357	4.60E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02147	ATPeV1B, ATP6B	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		mTOR signaling pathway	map04150
		Phagosome	map04145
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0046034	biological_process	ATP metabolic process
GO:0033180	cellular_component	proton-transporting V-type ATPase, V1 domain
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	178.312
	SRR3591706	second leaf	121.660
	SRR3591707	mature leaf	96.624
	SRR3591708	Shoot apex	138.915
	SRR3591709	Stem	119.419
	SRR3591710	White floral bud	114.406
	SRR3591711	White flower	155.698
	SRR3591712	Green floral bud	164.181
	SRR3591713	Yellow flower	158.954
SRP173429	SRR8316895	Juvenile bud stage	94.259
	SRR8316896	Juvenile bud stage	123.752
	SRR8316897	Juvenile bud stage	60.955
	SRR8316894	Third green stage	56.422
	SRR8316900	Third green stage	172.719
	SRR8316901	Third green stage	155.526
	SRR8316898	Complete white stage	60.200
	SRR8316899	Complete white stage	181.262
	SRR8316903	Complete white stage	95.576
	SRR8316902	Silver flowering stage	52.655
	SRR8316904	Silver flowering stage	69.272
	SRR8316905	Silver flowering stage	35.304
	SRR8316906	Gold flowering stage	111.299
	SRR8316907	Gold flowering stage	99.500
	SRR8316908	Gold flowering stage	118.582
SRP132670	SRR6706286	Control	144.463
	SRR6706287	Light intensity 50%	149.986
	SRR6706288	Light intensity 20%	153.795
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	109.301
	CNS0095593	Slightly white alabastrum(diploid) 2	114.781
	CNS0095594	Slightly white alabastrum(diploid) 3	105.076
	CNS0095595	Whole white alabastrum(diploid) 2	100.188
	CNS0095596	Whole white alabastrum(diploid) 3	97.314
	CNS0095597	Whole white alabastrum(diploid) 4	99.254
	CNS0095598	Silvery flower (diploied) 1	94.885
	CNS0095599	Silvery flower (diploied) 2	92.489
	CNS0095600	Silvery flower (diploied) 3	106.384
	CNS0095601	Golden flower (diploid) 1	82.804
	CNS0095602	Golden flower (diploid) 2	109.539
	CNS0095603	Golden flower (diploid) 3	103.962
	CNS0095604	Slightly white alabastrum(tetraploid) 1	132.897
	CNS0095605	Slightly white alabastrum(tetraploid) 2	110.834
	CNS0095606	Slightly white alabastrum(tetraploid) 3	204.602
	CNS0095607	Whole white alabastrum(tetraploid) 1	108.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	101.597
	CNS0095609	Whole white alabastrum(tetraploid) 3	159.263
	CNS0095610	Silvery flower (tetraploid) 1	91.887
	CNS0095611	Silvery flower (tetraploid) 2	81.527
	CNS0095612	Silvery flower (tetraploid) 3	90.098
	CNS0095613	Golden flower (tetraploid) 1	49.933
	CNS0095614	Golden flower (tetraploid) 2	72.785
	CNS0095615	Golden flower (tetraploid) 3	35.976
CRA001975	CRR073297	Stem 1	177.549
	CRR073298	Stem 2	164.997
	CRR073299	Stem 3	163.251
	CRR073300	Leaf 1	194.894
	CRR073301	Leaf 2	166.603
	CRR073302	Leaf 3	176.633
	CRR073303	Juvenile bud 1	202.223
	CRR073304	Juvenile bud 2	155.162
	CRR073305	Juvenile bud 3	229.134
	CRR073306	Third green 1	111.175
	CRR073307	Third green 2	116.907
	CRR073308	Third green 3	118.083
	CRR073309	Second white 1	122.377
	CRR073310	Second white 2	93.447
	CRR073311	Second white 3	79.000
	CRR073312	Silver flowering 1	92.339
	CRR073313	Silver flowering 2	110.155
	CRR073314	Silver flowering 3	84.162
	CRR073315	Gold flowering 1	97.906
	CRR073316	Gold flowering 2	126.677
	CRR073317	Gold flowering 3	102.285
	CRR073318	Tawny withering 1	134.406
	CRR073319	Tawny withering 2	108.920
	CRR073320	Tawny withering 3	141.207