Detail information of GWHGAAZE030199


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009620406.13.98375E-93PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis]
Swissprottr|Q9LNT9|ASK4_ARATH8E-78SKP1-like protein 4
trEMBLtr|A0ELU4|A0ELU4_PETIN6E-93Skp1-like protein 3 {ECO:0000313|EMBL:ABB77425.1}
TAIR10AT5G42190.18E-61E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3940102639403276+
GWHAAZE00000009mRNA3940102639403276+
GWHAAZE00000009exon3940102639401319+
GWHAAZE00000009exon3940310339403276+
GWHAAZE00000009CDS3940102639401319+
GWHAAZE00000009CDS3940310339403276+
Transcript Sequence

Network for GWHGAAZE030199

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03931.16Skp1_POZ5642.70E-30
PF01466.20Skp11061534.20E-30
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
K03094SKP1, CBF3D Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Wnt signaling pathwaymap04310
Hedgehog signaling pathway - flymap04341
TGF-beta signaling pathwaymap04350
Cell cyclemap04110
Cell cycle - yeastmap04111
Oocyte meiosismap04114
Circadian rhythmmap04710

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf807.239
SRR3591706second leaf428.028
SRR3591707mature leaf487.939
SRR3591708Shoot apex643.442
SRR3591709Stem865.780
SRR3591710White floral bud1042.668
SRR3591711White flower1189.646
SRR3591712Green floral bud853.472
SRR3591713Yellow flower1422.353
SRP173429 SRR8316895Juvenile bud stage 394.135
SRR8316896Juvenile bud stage 516.711
SRR8316897Juvenile bud stage 261.484
SRR8316894Third green stage 215.762
SRR8316900Third green stage 726.001
SRR8316901Third green stage 719.810
SRR8316898Complete white stage 428.094
SRR8316899Complete white stage 1025.034
SRR8316903Complete white stage 677.258
SRR8316902Silver flowering stage484.690
SRR8316904Silver flowering stage484.454
SRR8316905Silver flowering stage332.035
SRR8316906Gold flowering stage 1048.900
SRR8316907Gold flowering stage 1005.159
SRR8316908Gold flowering stage 887.660
SRP132670SRR6706286Control1163.395
SRR6706287Light intensity 50%1225.958
SRR6706288Light intensity 20%1307.344
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1578.347
CNS0095593Slightly white alabastrum(diploid) 2624.189
CNS0095594Slightly white alabastrum(diploid) 3566.369
CNS0095595Whole white alabastrum(diploid) 2551.121
CNS0095596Whole white alabastrum(diploid) 3505.739
CNS0095597Whole white alabastrum(diploid) 4564.104
CNS0095598Silvery flower (diploied) 1620.847
CNS0095599Silvery flower (diploied) 2678.621
CNS0095600Silvery flower (diploied) 31014.486
CNS0095601Golden flower (diploid) 1685.174
CNS0095602Golden flower (diploid) 21020.546
CNS0095603Golden flower (diploid) 3993.804
CNS0095604Slightly white alabastrum(tetraploid) 1540.783
CNS0095605Slightly white alabastrum(tetraploid) 2533.775
CNS0095606Slightly white alabastrum(tetraploid) 3679.978
CNS0095607Whole white alabastrum(tetraploid) 1467.167
CNS0095608Whole white alabastrum(tetraploid) 2479.355
CNS0095609Whole white alabastrum(tetraploid) 3545.370
CNS0095610Silvery flower (tetraploid) 1884.090
CNS0095611Silvery flower (tetraploid) 2930.129
CNS0095612Silvery flower (tetraploid) 3838.569
CNS0095613Golden flower (tetraploid) 11007.522
CNS0095614Golden flower (tetraploid) 2883.348
CNS0095615Golden flower (tetraploid) 31196.192
CRA001975CRR073297Stem 1808.762
CRR073298Stem 2789.197
CRR073299Stem 31060.262
CRR073300Leaf 1930.979
CRR073301Leaf 2985.936
CRR073302Leaf 31219.769
CRR073303Juvenile bud 11289.980
CRR073304Juvenile bud 21332.871
CRR073305Juvenile bud 31122.176
CRR073306Third green 11398.243
CRR073307Third green 21599.196
CRR073308Third green 31266.126
CRR073309Second white 11275.549
CRR073310Second white 2937.800
CRR073311Second white 3626.145
CRR073312Silver flowering 1830.886
CRR073313Silver flowering 21060.703
CRR073314Silver flowering 3741.306
CRR073315Gold flowering 1814.201
CRR073316Gold flowering 2734.776
CRR073317Gold flowering 3794.742
CRR073318Tawny withering 1945.608
CRR073319Tawny withering 2896.640
CRR073320Tawny withering 3916.869