Gene detail

Detail information of GWHGAAZE030193

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007041837.1	2.2229E-106	Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 4 [Theobroma cacao]
COG	YP_001958461.1	1E-10	hypothetical protein Aasi_1443
Swissprot	tr\|Q8VYA3\|WAKLJ_ARATH	2E-29	Wall-associated receptor kinase-like 10 (Precursor)
trEMBL	tr\|A0A061E616\|A0A061E616_THECC	8E-107	Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 4 {ECO:0000313\|EMBL:EOX97668.1}
TAIR10	AT4G35030.1	2E-41	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	39324545	39326459	+
GWHAAZE00000009	mRNA	39324545	39326459	+
GWHAAZE00000009	exon	39324545	39324794	+
GWHAAZE00000009	exon	39324897	39325060	+
GWHAAZE00000009	exon	39325679	39325828	+
GWHAAZE00000009	exon	39325914	39326459	+
GWHAAZE00000009	CDS	39324545	39324794	+
GWHAAZE00000009	CDS	39324897	39325060	+
GWHAAZE00000009	CDS	39325679	39325828	+
GWHAAZE00000009	CDS	39325914	39326189	+
GWHAAZE00000009	three_prime_UTR	39326190	39326459	+

Transcript Sequence
>GWHTAAZE030227 AATTTGCTTGCGAAAGGAGCAAGTAACAGCGTGTACAAGGGGCTTCTTCCTAATGGAAAGCGAGTAGCAGTAAAGATATCAAAATCATCTGAAGAAACATGGAACAATTTTACCATGGAAGTGAATATTCTTACCTCTTTGAAGCACAAAAACATCACTCCTCTCCTTGGAATTTGTGTAGAGCATAACGATCTGATATCTGTTCACGATTTCATGTCTAGAGGAAATCTAGAACAAAACTTGCAGAGTAATAATAGCAAGGATAAATCTGTACTGCCATGGGAGCTGAGATTCAATGTAGCTGTCGGGGTTGCTGAAGCTTTAAATTATTTGCACAATGAGTGTTCTCAGCCCGTAATCCATAGAGATATAAAGTCTTCAAACATTCTTCTCTCAGAGGAATATCAACCACAAGCGAAACCAAAACTAGAGAGTGGGGATCTTAAGAGCATAGTGGATCCGAATTTGGATGGAAATTTTGACAAATCTCAAGTACAACGAATGGCCATTGCAGCAACACTCTGCCTCACAAGAGCAGCCCGCCTTCGGCCTAAAATGAACCAGATACTAAAGATCTTAAGAGGGGAGAAAAAGGTGGAAGAGGGAATGAATATGAAATTGGAAGAAGAAAATGATTTAGAAATTGAGGACAACAATGAGGAGGAGGATGAGGATGATGAAGTGTATCCAGATTCATGCGCAAAGTCTCATTTGGAACTTGCATTGCTCGATACTAATGATGACTCTTTTACATCATTCAGCAGTTTGGAGCAAAGCAGCAATGTATCCGTGGAAGACTTCTTGAAAGGAAGATGGAGCCGTTCCTCAAGCTTAGATTAGCTTTGTTGCTTGTACTTTTCGAAACATTTTCCCCTTCTTTTTTTCTTTCCAAGAAAAAAACGTCCACACATACGTGCTAGCTTAGTTTTTTTTTTCCGGAGTTTTGCATGTGAGTTAGAGTGCTTGTATAGTTGAGCAGAAGACAGCTCGCACCCAATAATGAGGTGGAAAGTAGAATGTTGTAAAGAAAAAATCTTGGTTATGTTTTGGAAGAAAGTATTGATGATTTTGTAGAGAAGTAGGAGTTGGAAGTAATATTTGGTCTTTTTT

Network for GWHGAAZE030193

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	135	2.40E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.000
	SRR3591706	second leaf	5.265
	SRR3591707	mature leaf	0.542
	SRR3591708	Shoot apex	1.860
	SRR3591709	Stem	1.273
	SRR3591710	White floral bud	21.547
	SRR3591711	White flower	4.145
	SRR3591712	Green floral bud	36.258
	SRR3591713	Yellow flower	6.930
SRP173429	SRR8316895	Juvenile bud stage	1.208
	SRR8316896	Juvenile bud stage	2.261
	SRR8316897	Juvenile bud stage	1.229
	SRR8316894	Third green stage	5.594
	SRR8316900	Third green stage	42.276
	SRR8316901	Third green stage	42.341
	SRR8316898	Complete white stage	5.972
	SRR8316899	Complete white stage	12.502
	SRR8316903	Complete white stage	13.658
	SRR8316902	Silver flowering stage	2.010
	SRR8316904	Silver flowering stage	3.344
	SRR8316905	Silver flowering stage	1.821
	SRR8316906	Gold flowering stage	8.755
	SRR8316907	Gold flowering stage	5.359
	SRR8316908	Gold flowering stage	8.646
SRP132670	SRR6706286	Control	11.714
	SRR6706287	Light intensity 50%	10.301
	SRR6706288	Light intensity 20%	10.679
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.256
	CNS0095593	Slightly white alabastrum(diploid) 2	19.141
	CNS0095594	Slightly white alabastrum(diploid) 3	16.371
	CNS0095595	Whole white alabastrum(diploid) 2	44.872
	CNS0095596	Whole white alabastrum(diploid) 3	62.065
	CNS0095597	Whole white alabastrum(diploid) 4	53.185
	CNS0095598	Silvery flower (diploied) 1	3.691
	CNS0095599	Silvery flower (diploied) 2	3.088
	CNS0095600	Silvery flower (diploied) 3	4.860
	CNS0095601	Golden flower (diploid) 1	3.651
	CNS0095602	Golden flower (diploid) 2	5.165
	CNS0095603	Golden flower (diploid) 3	5.450
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.782
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.398
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.262
	CNS0095608	Whole white alabastrum(tetraploid) 2	66.552
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.775
	CNS0095610	Silvery flower (tetraploid) 1	16.058
	CNS0095611	Silvery flower (tetraploid) 2	22.568
	CNS0095612	Silvery flower (tetraploid) 3	14.073
	CNS0095613	Golden flower (tetraploid) 1	10.082
	CNS0095614	Golden flower (tetraploid) 2	19.571
	CNS0095615	Golden flower (tetraploid) 3	42.853
CRA001975	CRR073297	Stem 1	2.241
	CRR073298	Stem 2	3.450
	CRR073299	Stem 3	0.575
	CRR073300	Leaf 1	18.609
	CRR073301	Leaf 2	14.814
	CRR073302	Leaf 3	5.426
	CRR073303	Juvenile bud 1	6.648
	CRR073304	Juvenile bud 2	7.504
	CRR073305	Juvenile bud 3	2.625
	CRR073306	Third green 1	1.454
	CRR073307	Third green 2	0.672
	CRR073308	Third green 3	1.022
	CRR073309	Second white 1	0.151
	CRR073310	Second white 2	0.178
	CRR073311	Second white 3	0.198
	CRR073312	Silver flowering 1	1.726
	CRR073313	Silver flowering 2	1.346
	CRR073314	Silver flowering 3	1.309
	CRR073315	Gold flowering 1	1.678
	CRR073316	Gold flowering 2	0.830
	CRR073317	Gold flowering 3	0.718
	CRR073318	Tawny withering 1	2.793
	CRR073319	Tawny withering 2	2.281
	CRR073320	Tawny withering 3	1.383