Gene detail

Detail information of GWHGAAZE030174

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010650403.1	9.29617E-87	PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera]
COG	YP_008373463.1	8E-15	Ribosomal protein S11
Swissprot	tr\|Q4G348\|RR11_EMIHU	9E-15	30S ribosomal protein S11, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01310}
trEMBL	tr\|F6I489\|F6I489_VITVI	3E-87	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61804.1}
TAIR10	AT1G31817.1	1E-52	Ribosomal L18p/L5e family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	39030354	39031151	+
GWHAAZE00000009	mRNA	39030354	39031151	+
GWHAAZE00000009	exon	39030354	39031151	+
GWHAAZE00000009	CDS	39030354	39031151	+

Transcript Sequence
>GWHTAAZE030208 ATGCTCTCCCAACAACTCTTTGTTCGGTCCTCTATTCGAGCTGGATTCTTCAATCAAGCTTCTCGAATCTTTGGTCCCAGATCTGATTGCACATCCAATACGGTATTTTGTGCATCAAAGAACTTGGATCAGTCAGCCAAATCCCTCTCTCACATCCCACAAACCTCTGAGGTTCTTCAAGGTCTTCATAACAATATTTTGCACCGATTTATGTCAAACTCGGTTATGAAGGCGGGTTTTATGAAAGTGAAGGGGGAAGTCTTGTCACCATGTGCTGTGAGTTTCAAGAACTTCATACATTCCGTGGGCCCAAAGGATTTCGAAACTGAAAGGAACAATAGATCCATGAACTTTGTGAGGGGAATTATAGAAGAGAACCGAAGAGATACATTGGGTATCCATGAATCTCACTATGCGGTTGAGCATAATGCCGATATTGTCCATATAAAGCTGATTCGCAACAACACGTTTGTCACTATCACAGATTCTAAGGGAAACAAAAAAGCGGGGGCTTCCTCGGGATGTCTGTCGGAAATGAAAGGTGGCCCTAAAGTTTCTCGATACGCGGCTGAAGCAACTGCAGAACACATTGGCCGAGTTGCGAGGAATATGGGATTGAAGTCAGTTGTGATGAAAGTCAACGGGTTCACATTTTTCAAGAAAAAGAAGCAAGCAATTTTGAGCTTCAGAGAGGGATATACGCATTCTCGGGGCGATCAAAACCCTGTTGTATACGTTGAGGACACCACTCGACGCCCCCATAATGGATGCAGACTTCGAAAGAAAAGACGCGTGTAA

Network for GWHGAAZE030174

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00411.20	Ribosomal_S11	146	264	4.30E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02948	RP-S11, MRPS11, rpsK	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.314
	SRR3591706	second leaf	20.831
	SRR3591707	mature leaf	22.485
	SRR3591708	Shoot apex	35.124
	SRR3591709	Stem	24.307
	SRR3591710	White floral bud	37.200
	SRR3591711	White flower	45.644
	SRR3591712	Green floral bud	55.784
	SRR3591713	Yellow flower	39.806
SRP173429	SRR8316895	Juvenile bud stage	27.687
	SRR8316896	Juvenile bud stage	39.282
	SRR8316897	Juvenile bud stage	18.988
	SRR8316894	Third green stage	14.245
	SRR8316900	Third green stage	47.045
	SRR8316901	Third green stage	45.521
	SRR8316898	Complete white stage	12.893
	SRR8316899	Complete white stage	51.416
	SRR8316903	Complete white stage	17.859
	SRR8316902	Silver flowering stage	16.269
	SRR8316904	Silver flowering stage	16.439
	SRR8316905	Silver flowering stage	5.642
	SRR8316906	Gold flowering stage	28.844
	SRR8316907	Gold flowering stage	27.076
	SRR8316908	Gold flowering stage	39.102
SRP132670	SRR6706286	Control	41.239
	SRR6706287	Light intensity 50%	38.937
	SRR6706288	Light intensity 20%	40.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.774
	CNS0095593	Slightly white alabastrum(diploid) 2	53.123
	CNS0095594	Slightly white alabastrum(diploid) 3	43.708
	CNS0095595	Whole white alabastrum(diploid) 2	33.323
	CNS0095596	Whole white alabastrum(diploid) 3	37.901
	CNS0095597	Whole white alabastrum(diploid) 4	30.260
	CNS0095598	Silvery flower (diploied) 1	45.067
	CNS0095599	Silvery flower (diploied) 2	33.070
	CNS0095600	Silvery flower (diploied) 3	31.779
	CNS0095601	Golden flower (diploid) 1	29.582
	CNS0095602	Golden flower (diploid) 2	33.932
	CNS0095603	Golden flower (diploid) 3	32.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.511
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.864
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.483
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.080
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.245
	CNS0095610	Silvery flower (tetraploid) 1	41.638
	CNS0095611	Silvery flower (tetraploid) 2	39.695
	CNS0095612	Silvery flower (tetraploid) 3	39.307
	CNS0095613	Golden flower (tetraploid) 1	36.936
	CNS0095614	Golden flower (tetraploid) 2	40.421
	CNS0095615	Golden flower (tetraploid) 3	38.356
CRA001975	CRR073297	Stem 1	39.216
	CRR073298	Stem 2	37.823
	CRR073299	Stem 3	44.209
	CRR073300	Leaf 1	37.147
	CRR073301	Leaf 2	38.246
	CRR073302	Leaf 3	43.898
	CRR073303	Juvenile bud 1	47.314
	CRR073304	Juvenile bud 2	35.818
	CRR073305	Juvenile bud 3	41.691
	CRR073306	Third green 1	10.602
	CRR073307	Third green 2	10.980
	CRR073308	Third green 3	10.378
	CRR073309	Second white 1	26.291
	CRR073310	Second white 2	14.848
	CRR073311	Second white 3	13.426
	CRR073312	Silver flowering 1	21.351
	CRR073313	Silver flowering 2	23.903
	CRR073314	Silver flowering 3	17.659
	CRR073315	Gold flowering 1	41.038
	CRR073316	Gold flowering 2	41.938
	CRR073317	Gold flowering 3	37.223
	CRR073318	Tawny withering 1	31.597
	CRR073319	Tawny withering 2	26.299
	CRR073320	Tawny withering 3	36.622