Detail information of GWHGAAZE030104


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009345276.13.3058E-160PREDICTED: ubiquitin fusion degradation protein 1 homolog [Pyrus x bretschneideri]
trEMBLtr|U5GFU1|U5GFU1_POPTR4E-155Uncharacterized protein {ECO:0000313|EMBL:ERP62325.1}
TAIR10AT2G21270.21E-97ubiquitin fusion degradation 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3831801138320442-
GWHAAZE00000009mRNA3831801138320442-
GWHAAZE00000009exon3832029338320442-
GWHAAZE00000009exon3832002538320155-
GWHAAZE00000009exon3831903738319260-
GWHAAZE00000009exon3831852838318763-
GWHAAZE00000009exon3831801138318109-
GWHAAZE00000009CDS3832029338320442-
GWHAAZE00000009CDS3832002538320155-
GWHAAZE00000009CDS3831903738319260-
GWHAAZE00000009CDS3831852838318763-
GWHAAZE00000009CDS3831801138318109-
Transcript Sequence

Network for GWHGAAZE030104

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03152.15UFD141475.90E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14016UFD1 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf67.202
SRR3591706second leaf47.284
SRR3591707mature leaf63.553
SRR3591708Shoot apex53.997
SRR3591709Stem58.265
SRR3591710White floral bud52.736
SRR3591711White flower78.719
SRR3591712Green floral bud59.785
SRR3591713Yellow flower76.609
SRP173429 SRR8316895Juvenile bud stage 46.225
SRR8316896Juvenile bud stage 60.134
SRR8316897Juvenile bud stage 27.018
SRR8316894Third green stage 28.707
SRR8316900Third green stage 102.929
SRR8316901Third green stage 86.475
SRR8316898Complete white stage 52.717
SRR8316899Complete white stage 111.604
SRR8316903Complete white stage 72.147
SRR8316902Silver flowering stage52.179
SRR8316904Silver flowering stage65.240
SRR8316905Silver flowering stage35.622
SRR8316906Gold flowering stage 125.968
SRR8316907Gold flowering stage 117.314
SRR8316908Gold flowering stage 116.780
SRP132670SRR6706286Control71.293
SRR6706287Light intensity 50%78.582
SRR6706288Light intensity 20%86.405
CNP0000432CNS0095592Slightly white alabastrum(diploid) 165.903
CNS0095593Slightly white alabastrum(diploid) 279.651
CNS0095594Slightly white alabastrum(diploid) 352.801
CNS0095595Whole white alabastrum(diploid) 256.344
CNS0095596Whole white alabastrum(diploid) 356.893
CNS0095597Whole white alabastrum(diploid) 458.481
CNS0095598Silvery flower (diploied) 167.454
CNS0095599Silvery flower (diploied) 266.367
CNS0095600Silvery flower (diploied) 3105.067
CNS0095601Golden flower (diploid) 166.898
CNS0095602Golden flower (diploid) 2103.953
CNS0095603Golden flower (diploid) 398.919
CNS0095604Slightly white alabastrum(tetraploid) 172.948
CNS0095605Slightly white alabastrum(tetraploid) 265.600
CNS0095606Slightly white alabastrum(tetraploid) 3102.607
CNS0095607Whole white alabastrum(tetraploid) 151.691
CNS0095608Whole white alabastrum(tetraploid) 250.602
CNS0095609Whole white alabastrum(tetraploid) 382.467
CNS0095610Silvery flower (tetraploid) 1124.706
CNS0095611Silvery flower (tetraploid) 2125.051
CNS0095612Silvery flower (tetraploid) 3102.131
CNS0095613Golden flower (tetraploid) 1111.389
CNS0095614Golden flower (tetraploid) 2100.805
CNS0095615Golden flower (tetraploid) 3145.761
CRA001975CRR073297Stem 168.639
CRR073298Stem 263.760
CRR073299Stem 375.660
CRR073300Leaf 192.857
CRR073301Leaf 2100.507
CRR073302Leaf 3106.170
CRR073303Juvenile bud 1117.288
CRR073304Juvenile bud 2107.868
CRR073305Juvenile bud 3116.822
CRR073306Third green 1103.167
CRR073307Third green 290.749
CRR073308Third green 383.026
CRR073309Second white 184.787
CRR073310Second white 280.262
CRR073311Second white 374.794
CRR073312Silver flowering 173.341
CRR073313Silver flowering 270.463
CRR073314Silver flowering 367.219
CRR073315Gold flowering 1133.741
CRR073316Gold flowering 2140.193
CRR073317Gold flowering 3105.966
CRR073318Tawny withering 186.343
CRR073319Tawny withering 291.921
CRR073320Tawny withering 392.985