Gene detail

Detail information of GWHGAAZE030081

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008353497.1	3.87178E-33	PREDICTED: chaperone protein ClpB3, chloroplastic-like [Malus domestica]
COG	YP_007116625.1	1E-22	ATP-dependent chaperone ClpB
Swissprot	tr\|Q75GT3\|CLPB2_ORYSJ	2E-31	Chaperone protein ClpB2, chloroplastic (Precursor)
trEMBL	tr\|A0A068U3W2\|A0A068U3W2_COFCA	7E-33	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02303.1}
TAIR10	AT5G15450.1	2E-27	casein lytic proteinase B3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37869719	37870969	+
GWHAAZE00000009	mRNA	37869719	37870969	+
GWHAAZE00000009	exon	37869719	37870969	+
GWHAAZE00000009	CDS	37869719	37870969	+

Transcript Sequence
>GWHTAAZE030115 ATGATTGATAGTGAGAAGTTTACCAAAGAGGCCTGGGAAGCAATTGCTTATGCACTGAAAATGGCAGCTAGCATGCAACAAAAGGTGGAGACAGAGCATCTAATGAAAGCACTATTGGAACAAAAGCAAGGGCTTGTTAGTTGTGTTTTAAATGAGGTAAGCATAGATATCGCTCTTCTCTTGAAAATTACCAATGAATTTATTCAATGTCCACCAAAGAGTTTTGGTGAAAAAAATGGTTCAGTTATAGGGAGGGAACTGGCAGCATTGTTGCAGCGAGCCATGGAGTGGAAAGAAGAGTATGGGGATTTTTTAGTGTCAACTGAGCATTTATTGTTGGGTTTCAATTTAGATAATAGAGTTAGCAACCAATTGTACAAAGAAGGGAATGCAGTTGACATTTCTTTCAAAATATTAGATGCCATAGATGTTATGAGGAAGTCCCAAGCGTTCATGAACCAAGAGGAAACTTGTGAAGTATTGAAGAACTACATAGATGGGGAAAATCAAGAATACTTTGATGGGGAAAATCAAGAATACATTGATGCTCGGGTAATGGAAGTGACTAAATTCCATCAGGTCAGTGTTCTAAATGAAAGTTCTATTAAAAGGGGAGAGTTAATTACATGCAAAAATGGTTTGGGTGAATTAGCTAATTATGGTGCTAAGGTTAGTACATGTAAGGGCCTTGCTGCTTTCGAAGTTAAGCACCATGTAATTGATGACCAATCTACTGAAATGAACTTGATCATATTGATAAGCAATGAACCAACCTTGTTTGATGAAATGCCCAAGAGAGAACATTTGTTATGTAAGGCCATGATTTTGAAATATTTTCGAGAGAAGAAGTTAGATTATACATTGGATTTGAGAAAGAAAGAAAATTTTTGGACTCCACTAGCAATGCTAACTCAAAGTAACTGGTCAAATGTTGTAGTTCTGAATGCAAGCAGTAATTTTTCTATTGCTATTTTTGACTTAGCTGGTGTCTTTCTAAAAGGACTTGATGAGGGTACCTGGGTACATAGTTTCTTGGAAGACAACAAGTCAGATTGTGATACGGTGATTGGCAAAACAATGGAAGCAGTTCTGGTTATTAACACACAAGATAAGTATATTTTAAGGCATGGTCCAATGGTTGCATTGTATAATGAAAGGTGGAAGGCTCCTGACTACTTGAATCATTCGGAGAGCACAAGCACTAAGCTGAACCAAGAACCTATTTTTGTGTTTGATCCGGGAGGAAGCTAA

Network for GWHGAAZE030081

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.21	Clp_N	25	68	3.80E-08
PF02861.21	Clp_N	101	115	3.1

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.652
	SRR3591706	second leaf	0.954
	SRR3591707	mature leaf	1.957
	SRR3591708	Shoot apex	0.545
	SRR3591709	Stem	0.885
	SRR3591710	White floral bud	0.239
	SRR3591711	White flower	0.212
	SRR3591712	Green floral bud	0.479
	SRR3591713	Yellow flower	0.304
SRP173429	SRR8316895	Juvenile bud stage	1.156
	SRR8316896	Juvenile bud stage	2.523
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	1.072
	SRR8316900	Third green stage	2.706
	SRR8316901	Third green stage	1.422
	SRR8316898	Complete white stage	0.970
	SRR8316899	Complete white stage	2.191
	SRR8316903	Complete white stage	2.284
	SRR8316902	Silver flowering stage	1.005
	SRR8316904	Silver flowering stage	1.649
	SRR8316905	Silver flowering stage	0.758
	SRR8316906	Gold flowering stage	3.229
	SRR8316907	Gold flowering stage	2.062
	SRR8316908	Gold flowering stage	0.438
SRP132670	SRR6706286	Control	1.010
	SRR6706287	Light intensity 50%	1.242
	SRR6706288	Light intensity 20%	1.491
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.795
	CNS0095593	Slightly white alabastrum(diploid) 2	2.387
	CNS0095594	Slightly white alabastrum(diploid) 3	1.913
	CNS0095595	Whole white alabastrum(diploid) 2	0.682
	CNS0095596	Whole white alabastrum(diploid) 3	0.856
	CNS0095597	Whole white alabastrum(diploid) 4	0.808
	CNS0095598	Silvery flower (diploied) 1	2.050
	CNS0095599	Silvery flower (diploied) 2	0.287
	CNS0095600	Silvery flower (diploied) 3	1.781
	CNS0095601	Golden flower (diploid) 1	0.566
	CNS0095602	Golden flower (diploid) 2	1.881
	CNS0095603	Golden flower (diploid) 3	1.208
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.187
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.041
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.121
	CNS0095610	Silvery flower (tetraploid) 1	0.162
	CNS0095611	Silvery flower (tetraploid) 2	0.062
	CNS0095612	Silvery flower (tetraploid) 3	0.046
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.080
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.546
	CRR073298	Stem 2	0.689
	CRR073299	Stem 3	0.416
	CRR073300	Leaf 1	0.683
	CRR073301	Leaf 2	0.844
	CRR073302	Leaf 3	0.407
	CRR073303	Juvenile bud 1	0.284
	CRR073304	Juvenile bud 2	0.383
	CRR073305	Juvenile bud 3	0.089
	CRR073306	Third green 1	0.084
	CRR073307	Third green 2	0.563
	CRR073308	Third green 3	0.082
	CRR073309	Second white 1	0.134
	CRR073310	Second white 2	0.535
	CRR073311	Second white 3	0.199
	CRR073312	Silver flowering 1	0.530
	CRR073313	Silver flowering 2	0.099
	CRR073314	Silver flowering 3	0.386
	CRR073315	Gold flowering 1	0.743
	CRR073316	Gold flowering 2	0.778
	CRR073317	Gold flowering 3	0.126
	CRR073318	Tawny withering 1	0.468
	CRR073319	Tawny withering 2	0.291
	CRR073320	Tawny withering 3	0.402