Gene detail

Detail information of GWHGAAZE030080

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABQ10201.1	0	cysteine protease Cp3 [Actinidia deliciosa]
COG	YP_504536.1	8E-33	peptidase C1A, papain
Swissprot	tr\|P43296\|RD19A_ARATH	0	Cysteine proteinase RD19a (Precursor)
trEMBL	tr\|A5HIJ3\|A5HIJ3_ACTDE	0	Cysteine protease Cp3 {ECO:0000313\|EMBL:ABQ10201.1}
TAIR10	AT4G39090.1	4E-159	Papain family cysteine protease

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37847414	37850031	+
GWHAAZE00000009	mRNA	37847414	37850031	+
GWHAAZE00000009	exon	37847414	37847872	+
GWHAAZE00000009	exon	37849083	37849202	+
GWHAAZE00000009	exon	37849345	37849591	+
GWHAAZE00000009	exon	37849754	37850031	+
GWHAAZE00000009	CDS	37847414	37847872	+
GWHAAZE00000009	CDS	37849083	37849202	+
GWHAAZE00000009	CDS	37849345	37849591	+
GWHAAZE00000009	CDS	37849754	37850031	+

Transcript Sequence
>GWHTAAZE030114 ATGAATAATCCCCAATTCTCCTCCCTCCTCATCCTTTTCTCTCTCCTCCTCACAACTTCATTGGCTTCCAACATCATCGACAAGTACGACGAAGGTGATGCACTTATCCGTCAGGTGGTGGACGAAGACAGCTTATTAAACGCCGACCACCACTTTTCTCTCTTCAAGCGGAGGTTCGGGAAGTCCTATGAATCACAGGAGGAGCACGATTACAGGTTTTCCGTATTCCATGCTAACCTGCACCTTGCCAAAAGGCACCAGGAGCTGGATCCTTCGGCGGTCCACGGGGTTACTCAGTTTTCCGACATGACTCCGGAGGAGTTCAGGCAGAATCACCTAGGATTGAATCGGATCAGGTTTCCCTCGGATGCTAAAAAGGCACCCATACTGCCTACCAAGGATCTGCCCACGGATTTTGACTGGAGAGAGCATGGTGCCGTCACGGCGGTTAAGAATCAGGGTTCATGCGGATCATGCTGGTCATTCAGTACAACAGGGGCATTGGAAGGTGCAAATTATCTTGCAACTGGAAAGCTTGAGAGTCTTAGCGAACAACAGCTTGTTGATTGTGACCACGAGTGTGATCCGGAAGAGGCAGGTTCATGTGATGCAGGGTGCAATGGGGGGCTAATGAATAGTGCATTTGAATATACTCTCAAAGCTGGCGGTCTTATGAGAGAGAAAGACTACCCTTACGATGGTACTGACAAGGGAACCTGCAAATTTGACAAGAAAAAAATTGTTGCCTCCGTTCATAACTTCAGCGTCGTCTCCCTTGATGAAGACCAGATTGCAGCGAACCTCGTCAAAAATGGCCCTCTTGCTGTGGCAATCAATGCAGTTTACATGCAGACATATGTAGGTGGAGTTTCATGCCCTTACATATGCTCGAAGCAGTTGGACCATGGGGTGTTATTGGTTGGGTATGGGGCAGCCGGATATGCTCCCATCAGAATGAAGAAGAAGCCGTACTGGATCATAAAGAACTCATGGGGGGAAATGTGGGGTGAGAGTGGTTACTACAAAATATGCAAGGGTCGTAACGTTTGTGGTGTTGACTCCATGGTCTCCACCGTTGCTGCTATTCATCCCACCTCCCAATAG

Network for GWHGAAZE030080

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08246.13	Inhibitor_I29	52	108	3.90E-10
PF00112.24	Peptidase_C1	135	358	5.10E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01373	CTSF	Lysosome	map04142
		Apoptosis	map04210
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.951
	SRR3591706	second leaf	20.272
	SRR3591707	mature leaf	7.678
	SRR3591708	Shoot apex	5.081
	SRR3591709	Stem	348.554
	SRR3591710	White floral bud	75.527
	SRR3591711	White flower	76.889
	SRR3591712	Green floral bud	116.337
	SRR3591713	Yellow flower	12.812
SRP173429	SRR8316895	Juvenile bud stage	53.858
	SRR8316896	Juvenile bud stage	199.796
	SRR8316897	Juvenile bud stage	43.970
	SRR8316894	Third green stage	140.177
	SRR8316900	Third green stage	69.982
	SRR8316901	Third green stage	253.357
	SRR8316898	Complete white stage	20.938
	SRR8316899	Complete white stage	79.652
	SRR8316903	Complete white stage	52.695
	SRR8316902	Silver flowering stage	10.345
	SRR8316904	Silver flowering stage	11.333
	SRR8316905	Silver flowering stage	1.896
	SRR8316906	Gold flowering stage	11.906
	SRR8316907	Gold flowering stage	15.733
	SRR8316908	Gold flowering stage	6.501
SRP132670	SRR6706286	Control	268.707
	SRR6706287	Light intensity 50%	212.426
	SRR6706288	Light intensity 20%	96.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	176.018
	CNS0095593	Slightly white alabastrum(diploid) 2	122.015
	CNS0095594	Slightly white alabastrum(diploid) 3	350.630
	CNS0095595	Whole white alabastrum(diploid) 2	96.597
	CNS0095596	Whole white alabastrum(diploid) 3	117.741
	CNS0095597	Whole white alabastrum(diploid) 4	185.236
	CNS0095598	Silvery flower (diploied) 1	41.026
	CNS0095599	Silvery flower (diploied) 2	47.461
	CNS0095600	Silvery flower (diploied) 3	57.934
	CNS0095601	Golden flower (diploid) 1	30.934
	CNS0095602	Golden flower (diploid) 2	60.500
	CNS0095603	Golden flower (diploid) 3	62.161
	CNS0095604	Slightly white alabastrum(tetraploid) 1	102.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	128.546
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.602
	CNS0095607	Whole white alabastrum(tetraploid) 1	162.144
	CNS0095608	Whole white alabastrum(tetraploid) 2	151.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	105.787
	CNS0095610	Silvery flower (tetraploid) 1	27.921
	CNS0095611	Silvery flower (tetraploid) 2	44.707
	CNS0095612	Silvery flower (tetraploid) 3	36.418
	CNS0095613	Golden flower (tetraploid) 1	13.360
	CNS0095614	Golden flower (tetraploid) 2	12.882
	CNS0095615	Golden flower (tetraploid) 3	16.339
CRA001975	CRR073297	Stem 1	116.167
	CRR073298	Stem 2	341.439
	CRR073299	Stem 3	194.314
	CRR073300	Leaf 1	32.491
	CRR073301	Leaf 2	30.980
	CRR073302	Leaf 3	72.830
	CRR073303	Juvenile bud 1	13.658
	CRR073304	Juvenile bud 2	20.882
	CRR073305	Juvenile bud 3	26.090
	CRR073306	Third green 1	12.354
	CRR073307	Third green 2	58.871
	CRR073308	Third green 3	18.672
	CRR073309	Second white 1	8.254
	CRR073310	Second white 2	5.076
	CRR073311	Second white 3	4.839
	CRR073312	Silver flowering 1	9.127
	CRR073313	Silver flowering 2	8.824
	CRR073314	Silver flowering 3	10.482
	CRR073315	Gold flowering 1	3.437
	CRR073316	Gold flowering 2	2.542
	CRR073317	Gold flowering 3	3.469
	CRR073318	Tawny withering 1	46.428
	CRR073319	Tawny withering 2	55.913
	CRR073320	Tawny withering 3	48.244