Gene detail

Detail information of GWHGAAZE030047

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008236908.1	5.12791E-93	PREDICTED: transcription factor bHLH63 [Prunus mume]
Swissprot	tr\|Q8GY61\|BH063_ARATH	1E-42	Transcription factor bHLH63
trEMBL	tr\|M5VVW1\|M5VVW1_PRUPE	2E-93	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01063.1}
TAIR10	AT4G34530.1	5E-32	cryptochrome-interacting basic-helix-loop-helix 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37385848	37388628	+
GWHAAZE00000009	mRNA	37385848	37388628	+
GWHAAZE00000009	exon	37385848	37386572	+
GWHAAZE00000009	exon	37386957	37387184	+
GWHAAZE00000009	exon	37387293	37387426	+
GWHAAZE00000009	exon	37387983	37388102	+
GWHAAZE00000009	exon	37388562	37388628	+
GWHAAZE00000009	five_prime_UTR	37385848	37386074	+
GWHAAZE00000009	CDS	37386075	37386572	+
GWHAAZE00000009	CDS	37386957	37387184	+
GWHAAZE00000009	CDS	37387293	37387426	+
GWHAAZE00000009	CDS	37387983	37388102	+
GWHAAZE00000009	CDS	37388562	37388628	+

Transcript Sequence
>GWHTAAZE030081 TACTCTTCCAGTCTTCTCTCTTCTTTACAAAGAAGGCCGAAGGACGGACGGTACTATGAATGGGATAATGATTTTGAGAGTACGTGAGTTAGGCATGAACGCATACACACCTACCTAATTTTTACAGTACAATAGCAAACACCCACAATCAACGGGCACCCACCCCCTCTCCCATTCTATAACATCCCCTCTCTTTATCTCTCTCTCTCCACCACTATCTTAGAAAGATGAACAGAGCCTTGCCGGAGATGCTGCACAGTCTGAACTCGCCGGGAAATGTCGCCGGCGGTATGGACATGAGCGTTCTCGAGAGGCAAAGAACTCAAATGAAGTGGCAACTTCAGCAACAAAAGGATTTCTTCCATGGGAATGAGCTCAGTGGGTTCTCATTACCTGCTGCCCAAGGAGGACAATTTCAGGGATTTATCGGTGACGGAATGGGTTTGGGTCTTGGTGCGGTGAAACCGGACCCTGGTATGGATAATGGGTGGACTGACACCGGGAAGTTTGGCGGAGATGATTATATGGGCTTTCGGACAAGTGGGTATGGGAATGCGCCCGGGTCTGAGTTGAGTGGTGCAATTTCAAGGAGTAATACCTGCCTGCCGGCGGCGTTGGTTGCTGCAGGGGGCGGGAGAGAGGCAGCTTTACCGGAAAAGTTGAACTCTGCTGTGGGGAGAGAAAGACTCAAGAAGAGGAAAGCTGATAAGATGCAGAGCCTAAAGGAAATAGAAGAAGAGAGCAAAAAGAAGCGAATCAAAGAATGCGCTGAAGAGGGGGATTCTAAAATCACGGAGCAAACTAGTAACCTTGATAACAGTACTAACAGAGAGACTTCAACCAATAATTCAAAGGAGAATTCAAAAGTCACTACTGATGTTCAAAAGCCTGACTATATTCACGTTCGAGCACGTCGTGGCCAAGCCACTGATAGCCACAGCTTAGCTGAAAGAGTAAGAAGGGAGAAAATCAGTGAGAGAATGAAATATCTGCAAGATTTAGTACCAGGGTGTGACAAGATCACAGGGAAAGCCAGAATGCTTGACGAAATCATTAATTATGTCCAATCTCTTCAAAACAAGTTGAGCAAATACAACCCCCTTCAACCTACGGTGCTGACTTACAAAACTTTTACGGCGTGGACTTTCAACAAGGAAGAACATAATCATATCCGTTACAGCCATATGCAGGCAGATAGAATCACGCGGTTCCATGGAAGGTGGCTATATGAAAATGGAGATGTGATTTGGAGTATTAGTCGTATAATCTCTTAG

Network for GWHGAAZE030047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	236	283	2.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.092
	SRR3591706	second leaf	15.733
	SRR3591707	mature leaf	36.518
	SRR3591708	Shoot apex	11.132
	SRR3591709	Stem	10.543
	SRR3591710	White floral bud	91.973
	SRR3591711	White flower	7.379
	SRR3591712	Green floral bud	24.071
	SRR3591713	Yellow flower	2.718
SRP173429	SRR8316895	Juvenile bud stage	6.417
	SRR8316896	Juvenile bud stage	7.033
	SRR8316897	Juvenile bud stage	2.421
	SRR8316894	Third green stage	3.343
	SRR8316900	Third green stage	10.836
	SRR8316901	Third green stage	14.881
	SRR8316898	Complete white stage	69.771
	SRR8316899	Complete white stage	35.706
	SRR8316903	Complete white stage	100.998
	SRR8316902	Silver flowering stage	39.523
	SRR8316904	Silver flowering stage	61.041
	SRR8316905	Silver flowering stage	36.524
	SRR8316906	Gold flowering stage	72.889
	SRR8316907	Gold flowering stage	62.025
	SRR8316908	Gold flowering stage	66.349
SRP132670	SRR6706286	Control	33.651
	SRR6706287	Light intensity 50%	40.102
	SRR6706288	Light intensity 20%	25.335
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.894
	CNS0095593	Slightly white alabastrum(diploid) 2	8.537
	CNS0095594	Slightly white alabastrum(diploid) 3	6.215
	CNS0095595	Whole white alabastrum(diploid) 2	4.905
	CNS0095596	Whole white alabastrum(diploid) 3	5.668
	CNS0095597	Whole white alabastrum(diploid) 4	6.479
	CNS0095598	Silvery flower (diploied) 1	15.935
	CNS0095599	Silvery flower (diploied) 2	12.029
	CNS0095600	Silvery flower (diploied) 3	34.427
	CNS0095601	Golden flower (diploid) 1	5.901
	CNS0095602	Golden flower (diploid) 2	13.366
	CNS0095603	Golden flower (diploid) 3	11.662
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.098
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.534
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.849
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.498
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.508
	CNS0095610	Silvery flower (tetraploid) 1	26.480
	CNS0095611	Silvery flower (tetraploid) 2	26.930
	CNS0095612	Silvery flower (tetraploid) 3	95.707
	CNS0095613	Golden flower (tetraploid) 1	19.359
	CNS0095614	Golden flower (tetraploid) 2	19.578
	CNS0095615	Golden flower (tetraploid) 3	37.787
CRA001975	CRR073297	Stem 1	19.213
	CRR073298	Stem 2	19.810
	CRR073299	Stem 3	15.986
	CRR073300	Leaf 1	24.249
	CRR073301	Leaf 2	25.354
	CRR073302	Leaf 3	18.600
	CRR073303	Juvenile bud 1	14.285
	CRR073304	Juvenile bud 2	42.259
	CRR073305	Juvenile bud 3	26.079
	CRR073306	Third green 1	45.391
	CRR073307	Third green 2	37.860
	CRR073308	Third green 3	40.056
	CRR073309	Second white 1	11.815
	CRR073310	Second white 2	16.169
	CRR073311	Second white 3	11.031
	CRR073312	Silver flowering 1	4.202
	CRR073313	Silver flowering 2	3.739
	CRR073314	Silver flowering 3	4.331
	CRR073315	Gold flowering 1	14.785
	CRR073316	Gold flowering 2	19.070
	CRR073317	Gold flowering 3	17.988
	CRR073318	Tawny withering 1	1.344
	CRR073319	Tawny withering 2	2.500
	CRR073320	Tawny withering 3	1.885