Detail information of GWHGAAZE030043


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97049.10unnamed protein product [Coffea canephora]
COGYP_004775215.14E-20RHS repeat-associated core domain-containing protein
Swissprottr|C0LGK4|Y2165_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBLtr|A0A068TM84|A0A068TM84_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97049.1}
TAIR10AT2G16250.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3721193837218910-
GWHAAZE00000009mRNA3721193837218910-
GWHAAZE00000009exon3721193837212002-
GWHAAZE00000009exon3721251637212577-
GWHAAZE00000009exon3721273037213247-
GWHAAZE00000009exon3721414237214200-
GWHAAZE00000009exon3721462837214650-
GWHAAZE00000009exon3721499537215123-
GWHAAZE00000009exon3721697437218100-
GWHAAZE00000009exon3721824337218435-
GWHAAZE00000009exon3721851637218910-
GWHAAZE00000009CDS3721851637218910-
GWHAAZE00000009CDS3721824337218435-
GWHAAZE00000009CDS3721697437218100-
GWHAAZE00000009CDS3721499537215123-
GWHAAZE00000009CDS3721462837214650-
GWHAAZE00000009CDS3721414237214200-
GWHAAZE00000009CDS3721273037213247-
GWHAAZE00000009CDS3721251637212577-
GWHAAZE00000009CDS3721193837212002-
Transcript Sequence

Network for GWHGAAZE030043

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.7LRR_81221791.10E-06
PF07714.18PK_Tyr_Ser-Thr4495909.20E-18
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-XIV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005515molecular_functionprotein binding
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.785
SRR3591706second leaf0.624
SRR3591707mature leaf0.254
SRR3591708Shoot apex1.710
SRR3591709Stem1.448
SRR3591710White floral bud7.382
SRR3591711White flower4.888
SRR3591712Green floral bud3.482
SRR3591713Yellow flower1.843
SRP173429 SRR8316895Juvenile bud stage 1.440
SRR8316896Juvenile bud stage 1.894
SRR8316897Juvenile bud stage 0.536
SRR8316894Third green stage 0.888
SRR8316900Third green stage 2.132
SRR8316901Third green stage 2.299
SRR8316898Complete white stage 2.515
SRR8316899Complete white stage 2.556
SRR8316903Complete white stage 3.990
SRR8316902Silver flowering stage0.812
SRR8316904Silver flowering stage2.273
SRR8316905Silver flowering stage0.780
SRR8316906Gold flowering stage 1.582
SRR8316907Gold flowering stage 1.772
SRR8316908Gold flowering stage 1.467
SRP132670SRR6706286Control1.420
SRR6706287Light intensity 50%1.414
SRR6706288Light intensity 20%1.526
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.009
CNS0095593Slightly white alabastrum(diploid) 21.194
CNS0095594Slightly white alabastrum(diploid) 31.106
CNS0095595Whole white alabastrum(diploid) 20.968
CNS0095596Whole white alabastrum(diploid) 30.645
CNS0095597Whole white alabastrum(diploid) 40.512
CNS0095598Silvery flower (diploied) 10.756
CNS0095599Silvery flower (diploied) 21.081
CNS0095600Silvery flower (diploied) 33.103
CNS0095601Golden flower (diploid) 10.493
CNS0095602Golden flower (diploid) 21.783
CNS0095603Golden flower (diploid) 31.731
CNS0095604Slightly white alabastrum(tetraploid) 11.264
CNS0095605Slightly white alabastrum(tetraploid) 20.913
CNS0095606Slightly white alabastrum(tetraploid) 33.462
CNS0095607Whole white alabastrum(tetraploid) 10.324
CNS0095608Whole white alabastrum(tetraploid) 20.569
CNS0095609Whole white alabastrum(tetraploid) 32.370
CNS0095610Silvery flower (tetraploid) 13.065
CNS0095611Silvery flower (tetraploid) 21.538
CNS0095612Silvery flower (tetraploid) 33.337
CNS0095613Golden flower (tetraploid) 10.691
CNS0095614Golden flower (tetraploid) 21.813
CNS0095615Golden flower (tetraploid) 31.832
CRA001975CRR073297Stem 12.782
CRR073298Stem 22.505
CRR073299Stem 32.774
CRR073300Leaf 12.202
CRR073301Leaf 22.094
CRR073302Leaf 31.991
CRR073303Juvenile bud 11.483
CRR073304Juvenile bud 22.223
CRR073305Juvenile bud 32.177
CRR073306Third green 11.527
CRR073307Third green 22.078
CRR073308Third green 32.109
CRR073309Second white 10.813
CRR073310Second white 20.990
CRR073311Second white 30.891
CRR073312Silver flowering 11.084
CRR073313Silver flowering 20.814
CRR073314Silver flowering 30.553
CRR073315Gold flowering 10.546
CRR073316Gold flowering 21.006
CRR073317Gold flowering 30.614
CRR073318Tawny withering 12.496
CRR073319Tawny withering 22.009
CRR073320Tawny withering 32.340