Gene detail

Detail information of GWHGAAZE030041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO47528.1	5.89858E-55	hypothetical protein CISIN_1g022116mg [Citrus sinensis]
Swissprot	tr\|Q8GY61\|BH063_ARATH	8E-33	Transcription factor bHLH63
trEMBL	tr\|A0A067DXE3\|A0A067DXE3_CITSI	2E-55	Uncharacterized protein {ECO:0000313\|EMBL:KDO47528.1}
TAIR10	AT4G34530.1	6E-29	cryptochrome-interacting basic-helix-loop-helix 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37186962	37190366	+
GWHAAZE00000009	mRNA	37186962	37190366	+
GWHAAZE00000009	exon	37186962	37187686	+
GWHAAZE00000009	exon	37188396	37188530	+
GWHAAZE00000009	exon	37188643	37188714	+
GWHAAZE00000009	exon	37190322	37190366	+
GWHAAZE00000009	five_prime_UTR	37186962	37187149	+
GWHAAZE00000009	CDS	37187150	37187686	+
GWHAAZE00000009	CDS	37188396	37188530	+
GWHAAZE00000009	CDS	37188643	37188714	+
GWHAAZE00000009	CDS	37190322	37190366	+

Transcript Sequence
>GWHTAAZE030075 TACTCTTCCAGTCTTCTCTCTTCTTTACAAAGAAGGCCGAAGGACGGACGGTACTATGAATGGGATAATGATTTTGAGAGTACGTGAGTTAGGCATGAAAGCATACACACCTACCTAATTTTTACAGTACAATAGCAAACACCCACAATCAACGGGCACCCACCCCCTCTCCCATTCTACAACATCCCCTCTCTTTCTCTCTCTCTCTCCACCACTATCTTAGAAAGATGAACAGAGCCTTGCCGGAGATGCTGCACAGTCTGAACTCGCCGGGAAATGTCGCCGGCGGTATGGACATGAGCGTTCTCGAGAGGCAAAGAACTCAAATGAAGTGGCAACTTCAGCAACAAAAGGATTTCTTCCATGGGAATGAGCTCAGTGGGTTCTCATTACCTGCTGCCCAAGGAGGACAATTTCAGGGATTTATCGGTGACGGAATGGGTTTGGGTCTTGGTGCGGTGAAACCGGACCCTGGTATGGATAATGGGTGGACTGACACCGGGAAGTTTGGCGGAGATGATTATATGGGCTTTCGGACAAGTGGGTATGGGAATGCGCCCGGGTCTGAGTTGAGTGGTGCAATTTCAAGGAGTAATACCTGCCTGCCGGCGGCGTTGGTTGCTGCAGGGGGCGGGAGAGAGGCAGCTTTACCGGAAAAGTTGAACTCTGCTGTGGGGAGAGAAAGACTCAAGAAGAGGAAAGCTGATAAGATGCAGAGCCTAAAGGTAAGAAGGGAGAAAATCAGTGAGAGAATGAAATATCTGCAAGATTTAGTACCAGGGTGTGACAAGATCACAGGGAAAGCCGGAATGCTTGACGAAATCATTAATTATGTCCAATCTCTTCAAAAACAAGTTGAGTTCTTGTCTATGAAACTAGCTACTGTCAATCCAAGCCTGGACCTCAACATCGATAGTTTCTTCCCAAAAGAGTGGCCTGTTCTGGGACAGAAAGAGAAATGTGGACAGAGACGTTGA

Network for GWHGAAZE030041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.256
	SRR3591706	second leaf	13.595
	SRR3591707	mature leaf	31.888
	SRR3591708	Shoot apex	8.183
	SRR3591709	Stem	8.787
	SRR3591710	White floral bud	75.993
	SRR3591711	White flower	6.002
	SRR3591712	Green floral bud	19.961
	SRR3591713	Yellow flower	1.894
SRP173429	SRR8316895	Juvenile bud stage	4.918
	SRR8316896	Juvenile bud stage	4.777
	SRR8316897	Juvenile bud stage	2.203
	SRR8316894	Third green stage	2.703
	SRR8316900	Third green stage	9.012
	SRR8316901	Third green stage	10.419
	SRR8316898	Complete white stage	61.533
	SRR8316899	Complete white stage	26.918
	SRR8316903	Complete white stage	81.878
	SRR8316902	Silver flowering stage	36.557
	SRR8316904	Silver flowering stage	57.587
	SRR8316905	Silver flowering stage	32.194
	SRR8316906	Gold flowering stage	55.810
	SRR8316907	Gold flowering stage	50.434
	SRR8316908	Gold flowering stage	52.976
SRP132670	SRR6706286	Control	24.438
	SRR6706287	Light intensity 50%	32.344
	SRR6706288	Light intensity 20%	18.403
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.079
	CNS0095593	Slightly white alabastrum(diploid) 2	6.056
	CNS0095594	Slightly white alabastrum(diploid) 3	3.208
	CNS0095595	Whole white alabastrum(diploid) 2	4.008
	CNS0095596	Whole white alabastrum(diploid) 3	5.299
	CNS0095597	Whole white alabastrum(diploid) 4	3.378
	CNS0095598	Silvery flower (diploied) 1	11.599
	CNS0095599	Silvery flower (diploied) 2	9.930
	CNS0095600	Silvery flower (diploied) 3	30.522
	CNS0095601	Golden flower (diploid) 1	3.997
	CNS0095602	Golden flower (diploid) 2	11.792
	CNS0095603	Golden flower (diploid) 3	10.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.536
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.978
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.336
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.460
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.962
	CNS0095610	Silvery flower (tetraploid) 1	20.275
	CNS0095611	Silvery flower (tetraploid) 2	24.975
	CNS0095612	Silvery flower (tetraploid) 3	92.824
	CNS0095613	Golden flower (tetraploid) 1	15.825
	CNS0095614	Golden flower (tetraploid) 2	14.990
	CNS0095615	Golden flower (tetraploid) 3	31.438
CRA001975	CRR073297	Stem 1	15.302
	CRR073298	Stem 2	16.738
	CRR073299	Stem 3	12.286
	CRR073300	Leaf 1	20.292
	CRR073301	Leaf 2	17.894
	CRR073302	Leaf 3	16.384
	CRR073303	Juvenile bud 1	14.271
	CRR073304	Juvenile bud 2	43.543
	CRR073305	Juvenile bud 3	23.253
	CRR073306	Third green 1	44.074
	CRR073307	Third green 2	38.990
	CRR073308	Third green 3	40.792
	CRR073309	Second white 1	12.244
	CRR073310	Second white 2	16.729
	CRR073311	Second white 3	10.878
	CRR073312	Silver flowering 1	5.875
	CRR073313	Silver flowering 2	2.888
	CRR073314	Silver flowering 3	2.900
	CRR073315	Gold flowering 1	14.783
	CRR073316	Gold flowering 2	20.236
	CRR073317	Gold flowering 3	19.589
	CRR073318	Tawny withering 1	1.757
	CRR073319	Tawny withering 2	1.103
	CRR073320	Tawny withering 3	2.580