Detail information of GWHGAAZE030036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011092797.10PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250 [Sesamum indicum]
COGYP_004775215.11E-39RHS repeat-associated core domain-containing protein
Swissprottr|C0LGK4|Y2165_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBLtr|A0A068TM84|A0A068TM84_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97049.1}
TAIR10AT2G16250.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3701379137020012-
GWHAAZE00000009mRNA3701379137020012-
GWHAAZE00000009exon3701807337020012-
GWHAAZE00000009exon3701608637016214-
GWHAAZE00000009exon3701570837015730-
GWHAAZE00000009exon3701379137014398-
GWHAAZE00000009CDS3701807337020012-
GWHAAZE00000009CDS3701608637016214-
GWHAAZE00000009CDS3701570837015730-
GWHAAZE00000009CDS3701379137014398-
Transcript Sequence

Network for GWHGAAZE030036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00560.34LRR_11261461.2
PF13855.7LRR_81492067.00E-10
PF07714.18PK_Tyr_Ser-Thr5247961.50E-21
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-XIV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005515molecular_functionprotein binding
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.947
SRR3591706second leaf0.913
SRR3591707mature leaf0.320
SRR3591708Shoot apex2.500
SRR3591709Stem2.487
SRR3591710White floral bud8.829
SRR3591711White flower7.609
SRR3591712Green floral bud4.999
SRR3591713Yellow flower2.796
SRP173429 SRR8316895Juvenile bud stage 2.259
SRR8316896Juvenile bud stage 3.052
SRR8316897Juvenile bud stage 1.339
SRR8316894Third green stage 1.487
SRR8316900Third green stage 4.162
SRR8316901Third green stage 4.030
SRR8316898Complete white stage 4.296
SRR8316899Complete white stage 4.393
SRR8316903Complete white stage 7.407
SRR8316902Silver flowering stage1.212
SRR8316904Silver flowering stage3.531
SRR8316905Silver flowering stage1.083
SRR8316906Gold flowering stage 3.038
SRR8316907Gold flowering stage 3.140
SRR8316908Gold flowering stage 2.912
SRP132670SRR6706286Control2.626
SRR6706287Light intensity 50%2.926
SRR6706288Light intensity 20%2.925
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.639
CNS0095593Slightly white alabastrum(diploid) 22.193
CNS0095594Slightly white alabastrum(diploid) 32.052
CNS0095595Whole white alabastrum(diploid) 21.741
CNS0095596Whole white alabastrum(diploid) 31.395
CNS0095597Whole white alabastrum(diploid) 41.166
CNS0095598Silvery flower (diploied) 11.639
CNS0095599Silvery flower (diploied) 22.082
CNS0095600Silvery flower (diploied) 35.617
CNS0095601Golden flower (diploid) 11.280
CNS0095602Golden flower (diploid) 23.014
CNS0095603Golden flower (diploid) 33.000
CNS0095604Slightly white alabastrum(tetraploid) 12.289
CNS0095605Slightly white alabastrum(tetraploid) 21.865
CNS0095606Slightly white alabastrum(tetraploid) 35.939
CNS0095607Whole white alabastrum(tetraploid) 10.654
CNS0095608Whole white alabastrum(tetraploid) 20.861
CNS0095609Whole white alabastrum(tetraploid) 34.320
CNS0095610Silvery flower (tetraploid) 15.199
CNS0095611Silvery flower (tetraploid) 23.574
CNS0095612Silvery flower (tetraploid) 35.807
CNS0095613Golden flower (tetraploid) 11.403
CNS0095614Golden flower (tetraploid) 22.970
CNS0095615Golden flower (tetraploid) 33.363
CRA001975CRR073297Stem 16.397
CRR073298Stem 24.824
CRR073299Stem 36.669
CRR073300Leaf 15.190
CRR073301Leaf 24.132
CRR073302Leaf 34.372
CRR073303Juvenile bud 14.290
CRR073304Juvenile bud 24.289
CRR073305Juvenile bud 34.642
CRR073306Third green 13.143
CRR073307Third green 23.829
CRR073308Third green 34.776
CRR073309Second white 12.320
CRR073310Second white 21.945
CRR073311Second white 31.907
CRR073312Silver flowering 12.301
CRR073313Silver flowering 21.682
CRR073314Silver flowering 31.406
CRR073315Gold flowering 11.229
CRR073316Gold flowering 22.032
CRR073317Gold flowering 31.120
CRR073318Tawny withering 15.283
CRR073319Tawny withering 23.710
CRR073320Tawny withering 33.962