Detail information of GWHGAAZE030032


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO49095.10hypothetical protein CISIN_1g016458mg [Citrus sinensis]
COGYP_004451364.13E-38WD40 repeat-containing protein
Swissprottr|P93398|GBB2_TOBAC0Guanine nucleotide-binding protein subunit beta-2
trEMBLtr|A0A067E5E9|A0A067E5E9_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO49095.1}
TAIR10AT4G34460.13E-166GTP binding protein beta 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3697239236977224-
GWHAAZE00000009mRNA3697239236977224-
GWHAAZE00000009exon3697711936977224-
GWHAAZE00000009exon3697691036977004-
GWHAAZE00000009exon3697553036975954-
GWHAAZE00000009exon3697342636973834-
GWHAAZE00000009exon3697239236972517-
GWHAAZE00000009CDS3697711936977224-
GWHAAZE00000009CDS3697691036977004-
GWHAAZE00000009CDS3697553036975954-
GWHAAZE00000009CDS3697342636973834-
GWHAAZE00000009CDS3697239236972517-
Transcript Sequence

Network for GWHGAAZE030032

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4057935.60E-06
PF00400.33WD401091350.26
PF00400.33WD401501850.002
PF00400.33WD402582932.50E-07
PF00400.33WD403013400.0013
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K04536GNB1 Ras signaling pathway map04014
MAPK signaling pathway - yeastmap04011
Apelin signaling pathwaymap04371
PI3K-Akt signaling pathwaymap04151
Chemokine signaling pathwaymap04062
Relaxin signaling pathwaymap04926
Glutamatergic synapsemap04724
GABAergic synapsemap04727
Cholinergic synapsemap04725
Dopaminergic synapsemap04728
Serotonergic synapsemap04726
Retrograde endocannabinoid signalingmap04723
Phototransductionmap04744
Olfactory transductionmap04740
Circadian entrainmentmap04713

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf198.908
SRR3591706second leaf51.266
SRR3591707mature leaf43.892
SRR3591708Shoot apex98.773
SRR3591709Stem124.829
SRR3591710White floral bud113.114
SRR3591711White flower167.419
SRR3591712Green floral bud94.466
SRR3591713Yellow flower229.225
SRP173429 SRR8316895Juvenile bud stage 53.251
SRR8316896Juvenile bud stage 66.031
SRR8316897Juvenile bud stage 44.898
SRR8316894Third green stage 31.436
SRR8316900Third green stage 81.356
SRR8316901Third green stage 90.321
SRR8316898Complete white stage 60.848
SRR8316899Complete white stage 153.774
SRR8316903Complete white stage 107.594
SRR8316902Silver flowering stage52.881
SRR8316904Silver flowering stage75.447
SRR8316905Silver flowering stage40.397
SRR8316906Gold flowering stage 119.646
SRR8316907Gold flowering stage 101.052
SRR8316908Gold flowering stage 125.309
SRP132670SRR6706286Control103.657
SRR6706287Light intensity 50%102.308
SRR6706288Light intensity 20%108.518
CNP0000432CNS0095592Slightly white alabastrum(diploid) 169.796
CNS0095593Slightly white alabastrum(diploid) 259.820
CNS0095594Slightly white alabastrum(diploid) 354.937
CNS0095595Whole white alabastrum(diploid) 252.816
CNS0095596Whole white alabastrum(diploid) 343.539
CNS0095597Whole white alabastrum(diploid) 440.739
CNS0095598Silvery flower (diploied) 174.383
CNS0095599Silvery flower (diploied) 264.544
CNS0095600Silvery flower (diploied) 3116.937
CNS0095601Golden flower (diploid) 180.217
CNS0095602Golden flower (diploid) 2118.391
CNS0095603Golden flower (diploid) 3117.000
CNS0095604Slightly white alabastrum(tetraploid) 157.844
CNS0095605Slightly white alabastrum(tetraploid) 249.878
CNS0095606Slightly white alabastrum(tetraploid) 396.418
CNS0095607Whole white alabastrum(tetraploid) 136.697
CNS0095608Whole white alabastrum(tetraploid) 237.203
CNS0095609Whole white alabastrum(tetraploid) 361.825
CNS0095610Silvery flower (tetraploid) 1117.361
CNS0095611Silvery flower (tetraploid) 2125.204
CNS0095612Silvery flower (tetraploid) 360.613
CNS0095613Golden flower (tetraploid) 194.181
CNS0095614Golden flower (tetraploid) 2132.062
CNS0095615Golden flower (tetraploid) 3362.616
CRA001975CRR073297Stem 186.108
CRR073298Stem 281.480
CRR073299Stem 378.383
CRR073300Leaf 1105.672
CRR073301Leaf 296.640
CRR073302Leaf 387.672
CRR073303Juvenile bud 191.397
CRR073304Juvenile bud 275.522
CRR073305Juvenile bud 3103.931
CRR073306Third green 1108.684
CRR073307Third green 2101.624
CRR073308Third green 3103.793
CRR073309Second white 151.043
CRR073310Second white 253.293
CRR073311Second white 347.807
CRR073312Silver flowering 151.466
CRR073313Silver flowering 249.576
CRR073314Silver flowering 345.097
CRR073315Gold flowering 139.038
CRR073316Gold flowering 253.773
CRR073317Gold flowering 335.377
CRR073318Tawny withering 176.932
CRR073319Tawny withering 273.226
CRR073320Tawny withering 378.202