Gene detail

Detail information of GWHGAAZE030031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009609406.1	0	PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Nicotiana tomentosiformis]
COG	YP_002017974.1	8E-27	serine/threonine protein kinase
Swissprot	tr\|Q9ZNQ8\|PERK4_ARATH	0	Proline-rich receptor-like protein kinase PERK4
trEMBL	tr\|F6HQL9\|F6HQL9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56976.1}
TAIR10	AT2G18470.1	2E-159	roline-rich extensin-like receptor kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36964523	36967600	+
GWHAAZE00000009	mRNA	36964523	36967600	+
GWHAAZE00000009	exon	36964523	36964985	+
GWHAAZE00000009	exon	36965371	36965457	+
GWHAAZE00000009	exon	36965678	36965748	+
GWHAAZE00000009	exon	36965978	36966054	+
GWHAAZE00000009	exon	36966183	36966327	+
GWHAAZE00000009	exon	36966419	36966580	+
GWHAAZE00000009	exon	36967098	36967600	+
GWHAAZE00000009	CDS	36964523	36964985	+
GWHAAZE00000009	CDS	36965371	36965457	+
GWHAAZE00000009	CDS	36965678	36965748	+
GWHAAZE00000009	CDS	36965978	36966054	+
GWHAAZE00000009	CDS	36966183	36966327	+
GWHAAZE00000009	CDS	36966419	36966580	+
GWHAAZE00000009	CDS	36967098	36967358	+
GWHAAZE00000009	three_prime_UTR	36967359	36967600	+

Transcript Sequence
>GWHTAAZE030065 ATGCCTCCTGGCCAAAGTGCAGAGTACGGTGGGTGGGGAGCACCACCCCCGCCACCAGGAATGGCGAACAGTGCTGATATGAGCTCTGCGGCCTTCTCCGGTCCTTACCAACCGGCCATGCCTCCACCGCACCCGAGCCTTGCCCTAGGGTTCAACCAGAGCTCCTTCAGCTATGAGGACCTAAATGCTGCAACTGGCGGGTTTGCAAAGGAGAACTTATTGGGACAAGGTGGATTCGGGTACGTTCACAAAGGTGTCTTGCCCAATGGCAAAGAGGTAGCAGTGAAAAGTCTGAAATCTGGTAGTGGGCAAGGAGAAAGGGAATTTCAGGCCGAGGTTGACATTATTAGTCGCGTCCATCATCGCCACCTTGTGTCCCTTGTTGGGTATTGTATTACAGGATCTTCGAGGATGTTGGTTTACGAGTTTGTTTCCAATAATACTCTTGAATTCCACCTTCATGGAAAAGGTAACCCAGTTATGGATTGGCCTTCTAGACTCCGAATTGCATTGGGTTCAGCTAAAGGGTTTGCTTACCTCCATGAAGATTGCCACCCTCGCATTATCCACAGAGACATTAAGGCAGCAAATATTCTACTTGACGATCATTTTGAAGCCAAGGTGGCCGATTTTGGATTGGCCAAGCTTTCCAATGATACTAACACTCATGTATCAACACGTATTATGGGAACATTTGGGTACTTGGCGCCTGAGTATGCATCAAGTGGCAAGCTAACTGAGAAATCTGATGTTTATTCATATGGTATTGTGCTATTGGAACTGATTACTGGAAGACGCCCAGTGGATTACTCTAGCGACGATGAGGATACCTTAATCGATTGGGCTAGGCCTATTCTAATGCGTGCATCAGAGGGTGGAAGCTACGAAGAGCTGGTTGATCCACGCTTGGAGCGTAACTACGACCCCGCAGAGATGCTACGCATGGTAGCTTCGGCTGCTGCATGTATTCGACATTCTGCAAGAAGACGCCCGAAAATGAGCCAGATTGTACGGGCTTTAGAAGGCGATGTATCATTAGAAGACTTAAACGAGGGAGTAAAACCGGGGCACAGCAACGTGTTCAGCTCAAGTGGAGGCAGCTCAGAATACGACGGTCAATCTTACAATGCTGACATAAAGAAATTCAGACAGATCGCATTCTCCAGCACAGAATTCAGCAGCGGCGAGCACGGAGTAACCAGTGATTACAGCCACTCCTCAGGGGGCGAATCACAAGAGATGAAGAACAGGAGGCAAAACCTTTAAGTGCAAACAATCTCTCTACTCTTTCTTTCATAAGATCAACAGTCGACTCAAGGACATGAGGCTTATACTCGACCACTTTGCACTAGGAGTGGTGGTGTAAGCTGGCATTGTTGCTGCAATTGTTTTGTTTAAGGAAATTTTTTTGTTGCGGAACTAAGAGCCGCCATATGGGCTTTGTTTATGTAGATTTGAAAGGATGGGGGGTGAAGGCATCTTCAAGCCCGGGGCAGAGGAGCTTGATA

Network for GWHGAAZE030031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	71	340	2.60E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.885
	SRR3591706	second leaf	1.036
	SRR3591707	mature leaf	1.008
	SRR3591708	Shoot apex	2.426
	SRR3591709	Stem	6.311
	SRR3591710	White floral bud	434.785
	SRR3591711	White flower	22.227
	SRR3591712	Green floral bud	384.863
	SRR3591713	Yellow flower	12.097
SRP173429	SRR8316895	Juvenile bud stage	20.417
	SRR8316896	Juvenile bud stage	53.258
	SRR8316897	Juvenile bud stage	45.313
	SRR8316894	Third green stage	34.958
	SRR8316900	Third green stage	200.233
	SRR8316901	Third green stage	220.008
	SRR8316898	Complete white stage	0.481
	SRR8316899	Complete white stage	10.053
	SRR8316903	Complete white stage	1.239
	SRR8316902	Silver flowering stage	4.676
	SRR8316904	Silver flowering stage	9.568
	SRR8316905	Silver flowering stage	3.126
	SRR8316906	Gold flowering stage	1.656
	SRR8316907	Gold flowering stage	1.103
	SRR8316908	Gold flowering stage	1.173
SRP132670	SRR6706286	Control	137.759
	SRR6706287	Light intensity 50%	130.768
	SRR6706288	Light intensity 20%	116.758
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	203.520
	CNS0095593	Slightly white alabastrum(diploid) 2	188.242
	CNS0095594	Slightly white alabastrum(diploid) 3	233.448
	CNS0095595	Whole white alabastrum(diploid) 2	534.150
	CNS0095596	Whole white alabastrum(diploid) 3	618.389
	CNS0095597	Whole white alabastrum(diploid) 4	700.366
	CNS0095598	Silvery flower (diploied) 1	27.647
	CNS0095599	Silvery flower (diploied) 2	87.813
	CNS0095600	Silvery flower (diploied) 3	16.640
	CNS0095601	Golden flower (diploid) 1	32.010
	CNS0095602	Golden flower (diploid) 2	18.011
	CNS0095603	Golden flower (diploid) 3	18.142
	CNS0095604	Slightly white alabastrum(tetraploid) 1	409.498
	CNS0095605	Slightly white alabastrum(tetraploid) 2	461.495
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.485
	CNS0095607	Whole white alabastrum(tetraploid) 1	825.081
	CNS0095608	Whole white alabastrum(tetraploid) 2	960.859
	CNS0095609	Whole white alabastrum(tetraploid) 3	400.340
	CNS0095610	Silvery flower (tetraploid) 1	9.404
	CNS0095611	Silvery flower (tetraploid) 2	35.925
	CNS0095612	Silvery flower (tetraploid) 3	114.805
	CNS0095613	Golden flower (tetraploid) 1	13.538
	CNS0095614	Golden flower (tetraploid) 2	3.420
	CNS0095615	Golden flower (tetraploid) 3	39.621
CRA001975	CRR073297	Stem 1	39.597
	CRR073298	Stem 2	41.960
	CRR073299	Stem 3	13.964
	CRR073300	Leaf 1	241.525
	CRR073301	Leaf 2	169.131
	CRR073302	Leaf 3	68.092
	CRR073303	Juvenile bud 1	173.777
	CRR073304	Juvenile bud 2	100.007
	CRR073305	Juvenile bud 3	22.042
	CRR073306	Third green 1	70.201
	CRR073307	Third green 2	73.183
	CRR073308	Third green 3	71.618
	CRR073309	Second white 1	1.878
	CRR073310	Second white 2	17.393
	CRR073311	Second white 3	18.956
	CRR073312	Silver flowering 1	87.186
	CRR073313	Silver flowering 2	99.414
	CRR073314	Silver flowering 3	53.493
	CRR073315	Gold flowering 1	48.290
	CRR073316	Gold flowering 2	23.204
	CRR073317	Gold flowering 3	10.359
	CRR073318	Tawny withering 1	89.147
	CRR073319	Tawny withering 2	84.564
	CRR073320	Tawny withering 3	73.049