Gene detail

Detail information of GWHGAAZE030021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG30131.1	5.7487E-126	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic -like protein [Gossypium arboreum]
COG	YP_007213678.1	2E-47	ATP-dependent Clp protease, proteolytic subunit ClpP
Swissprot	tr\|Q9SAA2\|CLPP6_ARATH	1E-109	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic (Precursor)
trEMBL	tr\|A0A067LN55\|A0A067LN55_JATCU	1E-124	ATP-dependent Clp protease proteolytic subunit {ECO:0000256\|RuleBase:RU003567}
TAIR10	AT1G11750.1	1E-87	CLP protease proteolytic subunit 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36799796	36809592	-
GWHAAZE00000009	mRNA	36799796	36809592	-
GWHAAZE00000009	exon	36809534	36809592	-
GWHAAZE00000009	exon	36808007	36808108	-
GWHAAZE00000009	exon	36807791	36807852	-
GWHAAZE00000009	exon	36806886	36806988	-
GWHAAZE00000009	exon	36805710	36805911	-
GWHAAZE00000009	exon	36805558	36805623	-
GWHAAZE00000009	exon	36804497	36804637	-
GWHAAZE00000009	exon	36800254	36800307	-
GWHAAZE00000009	exon	36799796	36799939	-
GWHAAZE00000009	CDS	36809534	36809592	-
GWHAAZE00000009	CDS	36808007	36808108	-
GWHAAZE00000009	CDS	36807791	36807852	-
GWHAAZE00000009	CDS	36806886	36806988	-
GWHAAZE00000009	CDS	36805710	36805911	-
GWHAAZE00000009	CDS	36805558	36805623	-
GWHAAZE00000009	CDS	36804497	36804637	-
GWHAAZE00000009	CDS	36800254	36800307	-
GWHAAZE00000009	CDS	36799796	36799939	-

Transcript Sequence
>GWHTAAZE030055 ATGTTTATAGCAGCAGAAGTAGAAAATGGAGACACAATAGTGAAGAACCGTTTTCTAAGAAAGCTTGCGAATGGCGGCATCGGTTACCTCAGCTCCTCTAGGTTTATCTACGGCCTCTTTCACAGGTCATCATCATCCTCTATCTCATTATCTCTTCACAGACACTCAACCAAATCCATAGTTTCTGCTTTGCCAAGTCCTTACGGCGATTCCTCAACAAATGTTTGGGCGGATTGTTATGTTGTGTTTCCAGGACTATCCAGTAGAACACATGGGCTACAATTAAAGCTTGATGAGAAGAATCTCCATGCTGTTGGTAATCAAAGTTATGGTCCTATAGAAGCCAGAAGCAAAAATCCAATTGTGATGCCAGCTGTGTTGACTCCTGTGGGCCCACTGGATCTTTCTACTGTATTATTCAGGAATCGCATTATTTTTATTGGACAGCAAATTACCCCGGCGGTGGCTCAACAAGTTATATCACAGCTTGTGACTCTGGCAGCGATAGATGAGAATGCAGATATCCTGGTTTACATAAACTGCCCTGGTGGGAGCATCTACTCTGTGTTGGCAATCTACGATTGCATGTCTTGGATAAAGCCCAAGGTGGGAACAGTATGTTTTGGAATTGCTGCAAGCCATGCATCAATTCTTCTTGCTGGTGGAGAAAAGGGCATGCGGTATGCAATGCCAAATGCACGTATTATGATACATCAACCTCAAGGTGGATGTGGGGGTCACGTGTTGGATGTGAGGCGCCAAGTTGATGAAACAGTTCAATTTCGCCATAAAATTGACAAGATGTATGCTGCTTTTACTGGCCAACCAATTGAGACGGTGCAGGATGCCACTGAATGGGATAGATTCTTCTCTGTTTCCGAGGTAATATTTGGCCAACCTTTTGATTTCCGCAAGAGCATGAGTTCAGTGTAA

Network for GWHGAAZE030021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00574.24	CLP_protease	134	294	2.40E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01358	clpP, CLPP	Cell cycle - Caulobacter	map04112
K01358	clpP, CLPP	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.057
	SRR3591706	second leaf	80.901
	SRR3591707	mature leaf	82.546
	SRR3591708	Shoot apex	72.658
	SRR3591709	Stem	38.472
	SRR3591710	White floral bud	125.841
	SRR3591711	White flower	123.278
	SRR3591712	Green floral bud	110.161
	SRR3591713	Yellow flower	183.397
SRP173429	SRR8316895	Juvenile bud stage	35.968
	SRR8316896	Juvenile bud stage	52.341
	SRR8316897	Juvenile bud stage	30.761
	SRR8316894	Third green stage	28.137
	SRR8316900	Third green stage	114.358
	SRR8316901	Third green stage	93.721
	SRR8316898	Complete white stage	49.185
	SRR8316899	Complete white stage	132.880
	SRR8316903	Complete white stage	69.732
	SRR8316902	Silver flowering stage	53.868
	SRR8316904	Silver flowering stage	74.254
	SRR8316905	Silver flowering stage	38.109
	SRR8316906	Gold flowering stage	124.161
	SRR8316907	Gold flowering stage	106.410
	SRR8316908	Gold flowering stage	119.662
SRP132670	SRR6706286	Control	126.908
	SRR6706287	Light intensity 50%	136.324
	SRR6706288	Light intensity 20%	149.966
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.188
	CNS0095593	Slightly white alabastrum(diploid) 2	38.870
	CNS0095594	Slightly white alabastrum(diploid) 3	31.119
	CNS0095595	Whole white alabastrum(diploid) 2	47.706
	CNS0095596	Whole white alabastrum(diploid) 3	54.015
	CNS0095597	Whole white alabastrum(diploid) 4	46.291
	CNS0095598	Silvery flower (diploied) 1	41.313
	CNS0095599	Silvery flower (diploied) 2	40.823
	CNS0095600	Silvery flower (diploied) 3	79.704
	CNS0095601	Golden flower (diploid) 1	39.518
	CNS0095602	Golden flower (diploid) 2	80.015
	CNS0095603	Golden flower (diploid) 3	71.403
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.974
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.928
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.285
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.584
	CNS0095610	Silvery flower (tetraploid) 1	80.644
	CNS0095611	Silvery flower (tetraploid) 2	98.039
	CNS0095612	Silvery flower (tetraploid) 3	105.782
	CNS0095613	Golden flower (tetraploid) 1	74.388
	CNS0095614	Golden flower (tetraploid) 2	79.231
	CNS0095615	Golden flower (tetraploid) 3	130.933
CRA001975	CRR073297	Stem 1	61.218
	CRR073298	Stem 2	66.859
	CRR073299	Stem 3	70.144
	CRR073300	Leaf 1	106.124
	CRR073301	Leaf 2	91.679
	CRR073302	Leaf 3	109.448
	CRR073303	Juvenile bud 1	137.315
	CRR073304	Juvenile bud 2	134.486
	CRR073305	Juvenile bud 3	86.752
	CRR073306	Third green 1	151.583
	CRR073307	Third green 2	106.963
	CRR073308	Third green 3	116.151
	CRR073309	Second white 1	147.922
	CRR073310	Second white 2	116.692
	CRR073311	Second white 3	92.574
	CRR073312	Silver flowering 1	115.584
	CRR073313	Silver flowering 2	109.715
	CRR073314	Silver flowering 3	95.108
	CRR073315	Gold flowering 1	150.049
	CRR073316	Gold flowering 2	165.415
	CRR073317	Gold flowering 3	123.751
	CRR073318	Tawny withering 1	42.096
	CRR073319	Tawny withering 2	33.019
	CRR073320	Tawny withering 3	36.996