Detail information of GWHGAAZE029998


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006365488.10PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
COGYP_005846047.11E-81Long-chain acyl-CoA synthetase
Swissprottr|Q9XIA9|LACS2_ARATH0Long chain acyl-CoA synthetase 2
trEMBLtr|M1CCY6|M1CCY6_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400064817}
TAIR10AT1G49430.10long-chain acyl-CoA synthetase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3651095436520379-
GWHAAZE00000009mRNA3651095436520379-
GWHAAZE00000009exon3652012736520379-
GWHAAZE00000009exon3651812636518189-
GWHAAZE00000009exon3651790536517994-
GWHAAZE00000009exon3651706836517124-
GWHAAZE00000009exon3651687736516925-
GWHAAZE00000009exon3651663636516716-
GWHAAZE00000009exon3651584936515888-
GWHAAZE00000009exon3651566836515734-
GWHAAZE00000009exon3651538836515552-
GWHAAZE00000009exon3651437436514484-
GWHAAZE00000009exon3651417136514258-
GWHAAZE00000009exon3651402436514090-
GWHAAZE00000009exon3651384836513923-
GWHAAZE00000009exon3651363436513751-
GWHAAZE00000009exon3651283236513077-
GWHAAZE00000009exon3651200736512146-
GWHAAZE00000009exon3651161136511793-
GWHAAZE00000009exon3651140436511523-
GWHAAZE00000009exon3651095436511001-
GWHAAZE00000009five_prime_UTR3652027336520379-
GWHAAZE00000009CDS3652012736520272-
GWHAAZE00000009CDS3651812636518189-
GWHAAZE00000009CDS3651790536517994-
GWHAAZE00000009CDS3651706836517124-
GWHAAZE00000009CDS3651687736516925-
GWHAAZE00000009CDS3651663636516716-
GWHAAZE00000009CDS3651584936515888-
GWHAAZE00000009CDS3651566836515734-
GWHAAZE00000009CDS3651538836515552-
GWHAAZE00000009CDS3651437436514484-
GWHAAZE00000009CDS3651417136514258-
GWHAAZE00000009CDS3651402436514090-
GWHAAZE00000009CDS3651384836513923-
GWHAAZE00000009CDS3651363436513751-
GWHAAZE00000009CDS3651283236513077-
GWHAAZE00000009CDS3651200736512146-
GWHAAZE00000009CDS3651161136511793-
GWHAAZE00000009CDS3651140436511523-
GWHAAZE00000009CDS3651095436511001-
Transcript Sequence

Network for GWHGAAZE029998

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding625131.20E-96
PF13193.7AMP-binding_C5235911.70E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01897ACSL, fadD Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Ferroptosismap04216
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.850
SRR3591706second leaf170.742
SRR3591707mature leaf14.895
SRR3591708Shoot apex68.279
SRR3591709Stem12.506
SRR3591710White floral bud13.386
SRR3591711White flower7.737
SRR3591712Green floral bud33.614
SRR3591713Yellow flower5.105
SRP173429 SRR8316895Juvenile bud stage 39.679
SRR8316896Juvenile bud stage 49.876
SRR8316897Juvenile bud stage 19.060
SRR8316894Third green stage 21.208
SRR8316900Third green stage 72.134
SRR8316901Third green stage 61.058
SRR8316898Complete white stage 7.132
SRR8316899Complete white stage 45.458
SRR8316903Complete white stage 10.538
SRR8316902Silver flowering stage3.955
SRR8316904Silver flowering stage3.946
SRR8316905Silver flowering stage1.295
SRR8316906Gold flowering stage 3.885
SRR8316907Gold flowering stage 2.741
SRR8316908Gold flowering stage 3.042
SRP132670SRR6706286Control51.601
SRR6706287Light intensity 50%58.151
SRR6706288Light intensity 20%70.796
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.468
CNS0095593Slightly white alabastrum(diploid) 218.936
CNS0095594Slightly white alabastrum(diploid) 316.049
CNS0095595Whole white alabastrum(diploid) 216.987
CNS0095596Whole white alabastrum(diploid) 312.161
CNS0095597Whole white alabastrum(diploid) 415.082
CNS0095598Silvery flower (diploied) 121.721
CNS0095599Silvery flower (diploied) 218.903
CNS0095600Silvery flower (diploied) 39.599
CNS0095601Golden flower (diploid) 114.588
CNS0095602Golden flower (diploid) 29.252
CNS0095603Golden flower (diploid) 39.359
CNS0095604Slightly white alabastrum(tetraploid) 134.630
CNS0095605Slightly white alabastrum(tetraploid) 221.174
CNS0095606Slightly white alabastrum(tetraploid) 391.545
CNS0095607Whole white alabastrum(tetraploid) 111.527
CNS0095608Whole white alabastrum(tetraploid) 25.188
CNS0095609Whole white alabastrum(tetraploid) 380.810
CNS0095610Silvery flower (tetraploid) 16.109
CNS0095611Silvery flower (tetraploid) 24.668
CNS0095612Silvery flower (tetraploid) 33.073
CNS0095613Golden flower (tetraploid) 12.672
CNS0095614Golden flower (tetraploid) 23.578
CNS0095615Golden flower (tetraploid) 32.313
CRA001975CRR073297Stem 162.747
CRR073298Stem 260.593
CRR073299Stem 348.128
CRR073300Leaf 190.962
CRR073301Leaf 272.076
CRR073302Leaf 371.657
CRR073303Juvenile bud 149.061
CRR073304Juvenile bud 240.015
CRR073305Juvenile bud 343.513
CRR073306Third green 11.078
CRR073307Third green 21.136
CRR073308Third green 31.278
CRR073309Second white 10.596
CRR073310Second white 20.673
CRR073311Second white 31.181
CRR073312Silver flowering 10.533
CRR073313Silver flowering 20.595
CRR073314Silver flowering 30.302
CRR073315Gold flowering 117.576
CRR073316Gold flowering 213.909
CRR073317Gold flowering 319.112
CRR073318Tawny withering 15.295
CRR073319Tawny withering 23.068
CRR073320Tawny withering 38.289