Gene detail

Detail information of GWHGAAZE029975

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004505181.1	0	PREDICTED: serine/threonine-protein kinase SRK2E-like [Cicer arietinum]
COG	YP_003101494.1	1E-27	serine/threonine protein kinase
Swissprot	tr\|Q940H6\|SRK2E_ARATH	0	Serine/threonine-protein kinase SRK2E
trEMBL	tr\|K4B344\|K4B344_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g108280.2.1}
TAIR10	AT4G33950.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36123656	36129531	+
GWHAAZE00000009	mRNA	36123656	36129531	+
GWHAAZE00000009	exon	36123656	36123832	+
GWHAAZE00000009	exon	36124989	36125063	+
GWHAAZE00000009	exon	36125147	36125248	+
GWHAAZE00000009	exon	36125373	36125426	+
GWHAAZE00000009	exon	36125527	36125619	+
GWHAAZE00000009	exon	36125879	36125971	+
GWHAAZE00000009	exon	36128338	36128442	+
GWHAAZE00000009	exon	36128538	36128636	+
GWHAAZE00000009	exon	36129241	36129531	+
GWHAAZE00000009	CDS	36123656	36123832	+
GWHAAZE00000009	CDS	36124989	36125063	+
GWHAAZE00000009	CDS	36125147	36125248	+
GWHAAZE00000009	CDS	36125373	36125426	+
GWHAAZE00000009	CDS	36125527	36125619	+
GWHAAZE00000009	CDS	36125879	36125971	+
GWHAAZE00000009	CDS	36128338	36128442	+
GWHAAZE00000009	CDS	36128538	36128636	+
GWHAAZE00000009	CDS	36129241	36129531	+

Transcript Sequence
>GWHTAAZE030009 ATGGATCGATCGGCGGTTACAGTAGGGCCGGGGATGGACTTGCCGATCATGCACGATAGCGATCGATACGAGCTCGTAAAGGACATAGGTTCGGGGAATTTTGGAGTGGCGAGGTTGATGAGGGACAAGCAGAGTAACGAGCTTGTAGCTGTTAAGTACATCGAGAGAGGTGAGAAGATAGATGAGAATGTACAAAGGGAGATAATTAATCACAGATCACTAAGGCATCCAAATATTGTCAGATTCAAAGAGGTCATTTTAACACCAACCCATCTGGCTATTGTGATGGAATATGCATCTGGAGGAGAGCTCTTTGAGCGAATATGCAATGCAGGCCGATTCAGTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCAGGAGTCAGCTACTGTCATGCAATGCAAGTATGCCACCGTGACTTAAAATTGGAAAATACATTACTGGATGGTAGCCCTGCTCCTCGGCTGAAGATTTGTGATTTTGGGTATTCCAAGTCCTCGGTGCTGCATTCCCAACCGAAATCAACCGTAGGAACGCCTGCATACATAGCTCCTGAAGTGTTACTTAAGAAAGAATATGATGGCAAGATTGCAGATGTATGGTCTTGCGGTGTAACTTTATATGTCATGCTGGTGGGGGCATACCCTTTTGAGGACCCTGATGAACCCAAGAACTTCCGCAAGACAATACATAGAATCCTGAATGTACAGTACTCCATTCCGGACTATGTTCATATATCTGCCGAATGTCGCCATCTGATTTCGAGGATTTTTGTGGCTGACCCTGCTAAGAGGATAACGATGCCCGAGATAAGGAACGACGAGTGGTTTCTGAAGAACCTACCAGCAGACCTGATGGACGAGAACAAGACAAACCAGTTCGAGGAGCCCGATCAACCCATGCAGACAGATGACGAAATCATGCAGATTATTACAGAAGCCACCATCCCTGCTGCTGGTACCAACAACCTCAACCAGTATCTGACCGGCAGTCTTGATATCGATGATGACATGGATGAGGACCTAGAGAGTGATCCCGACCTCGACATTGATAGCAGTGGTGAGATTGTCTATGCCATGTGA

Network for GWHGAAZE029975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	23	279	4.20E-71

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_OST1L

KEGG pathway

KO	Enzyme	pathway	mapID
K14498	SNRK2	MAPK signaling pathway - plant	map04016
K14498	SNRK2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.747
	SRR3591706	second leaf	55.290
	SRR3591707	mature leaf	102.072
	SRR3591708	Shoot apex	67.111
	SRR3591709	Stem	116.054
	SRR3591710	White floral bud	119.131
	SRR3591711	White flower	165.670
	SRR3591712	Green floral bud	85.351
	SRR3591713	Yellow flower	215.542
SRP173429	SRR8316895	Juvenile bud stage	43.017
	SRR8316896	Juvenile bud stage	53.090
	SRR8316897	Juvenile bud stage	27.278
	SRR8316894	Third green stage	22.071
	SRR8316900	Third green stage	62.353
	SRR8316901	Third green stage	58.468
	SRR8316898	Complete white stage	39.685
	SRR8316899	Complete white stage	130.821
	SRR8316903	Complete white stage	59.920
	SRR8316902	Silver flowering stage	41.958
	SRR8316904	Silver flowering stage	53.714
	SRR8316905	Silver flowering stage	31.389
	SRR8316906	Gold flowering stage	105.865
	SRR8316907	Gold flowering stage	94.740
	SRR8316908	Gold flowering stage	108.428
SRP132670	SRR6706286	Control	79.650
	SRR6706287	Light intensity 50%	75.649
	SRR6706288	Light intensity 20%	78.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.074
	CNS0095593	Slightly white alabastrum(diploid) 2	47.375
	CNS0095594	Slightly white alabastrum(diploid) 3	36.853
	CNS0095595	Whole white alabastrum(diploid) 2	45.858
	CNS0095596	Whole white alabastrum(diploid) 3	33.180
	CNS0095597	Whole white alabastrum(diploid) 4	37.647
	CNS0095598	Silvery flower (diploied) 1	107.826
	CNS0095599	Silvery flower (diploied) 2	79.509
	CNS0095600	Silvery flower (diploied) 3	146.649
	CNS0095601	Golden flower (diploid) 1	97.182
	CNS0095602	Golden flower (diploid) 2	159.477
	CNS0095603	Golden flower (diploid) 3	154.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.701
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.283
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.131
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.981
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.904
	CNS0095610	Silvery flower (tetraploid) 1	128.862
	CNS0095611	Silvery flower (tetraploid) 2	166.020
	CNS0095612	Silvery flower (tetraploid) 3	104.655
	CNS0095613	Golden flower (tetraploid) 1	115.251
	CNS0095614	Golden flower (tetraploid) 2	133.013
	CNS0095615	Golden flower (tetraploid) 3	172.667
CRA001975	CRR073297	Stem 1	108.414
	CRR073298	Stem 2	102.242
	CRR073299	Stem 3	105.001
	CRR073300	Leaf 1	87.584
	CRR073301	Leaf 2	94.146
	CRR073302	Leaf 3	84.921
	CRR073303	Juvenile bud 1	89.611
	CRR073304	Juvenile bud 2	69.129
	CRR073305	Juvenile bud 3	90.839
	CRR073306	Third green 1	56.162
	CRR073307	Third green 2	48.091
	CRR073308	Third green 3	56.117
	CRR073309	Second white 1	56.882
	CRR073310	Second white 2	59.587
	CRR073311	Second white 3	49.889
	CRR073312	Silver flowering 1	53.228
	CRR073313	Silver flowering 2	45.879
	CRR073314	Silver flowering 3	53.408
	CRR073315	Gold flowering 1	105.293
	CRR073316	Gold flowering 2	137.954
	CRR073317	Gold flowering 3	107.219
	CRR073318	Tawny withering 1	127.427
	CRR073319	Tawny withering 2	103.832
	CRR073320	Tawny withering 3	93.904