Gene detail

Detail information of GWHGAAZE029974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN81424.1	7.6114E-153	hypothetical protein VITISV_035944 [Vitis vinifera]
Swissprot	tr\|Q9LTH4\|PCLL_ARATH	1E-14	Transcription factor BOA
trEMBL	tr\|A5BS05\|A5BS05_VITVI	3E-153	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81424.1}
TAIR10	AT1G68670.1	1E-45	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36096964	36099278	-
GWHAAZE00000009	mRNA	36096964	36099278	-
GWHAAZE00000009	exon	36096964	36097233	-
GWHAAZE00000009	exon	36097328	36097404	-
GWHAAZE00000009	exon	36097993	36098350	-
GWHAAZE00000009	exon	36098443	36098690	-
GWHAAZE00000009	exon	36099053	36099278	-
GWHAAZE00000009	CDS	36099053	36099278	-
GWHAAZE00000009	CDS	36098443	36098690	-
GWHAAZE00000009	CDS	36097993	36098350	-
GWHAAZE00000009	CDS	36097328	36097404	-
GWHAAZE00000009	CDS	36096964	36097233	-

Transcript Sequence
>GWHTAAZE030008 ATGGTGTTTAATCCGCCTGAGCTGAGCTTAAATTTTAGGAATAATAATAATACATATTATGTTCCGAAAACTATCAGTGAATTTATGGGGCAATTATCGGCGATCGGTAACAGGTCGGAGAGGTTGTTGAAGCTGGATGAATTTGTGAAGAGATTGGAGGACGAAATGAGGAAGATCGACGTCTTTAAGCGCGAGCTTCCTCTGTCTATACTTTTAATCAATGACGTGATTACGGCTCTGAAGGAGGAATCAATGCAGTGTAGGAAATCAAATATGGAACCAGTACTTGAAGAATTCATACCATTGAAGAAGACTCGTGATGCAGATGAAAAGGGTGATGATTCTAGAAAGGAAATGGACTGTAGAGATAAGAGGAATTGGTTGAGCTCTGTGCAGCTCTGGAATAGTGCTGCTTGTCCCACTACTGATTCCAGTCACTATCGAAAACAAAATTCACGTGTGGAAATTAAAAAGAGTGCTGAGAAAGAAAAACGCCGGGTGATGGATGATAAGAAGGGATTTATGCCATTTAAGGGCTATTCTTCGTTTCATGTGGGAGAGGCTAATAAGGAAGATAAAGAGGGACTACCAACTGAGGGTCTTTCTCTTCTCACTCCCGGGATTAAGAATTCTAAAGAAGAACTGGATTATAGGGGTTTGAGTTACAAAACCAGTTGTAGTAGAGCAATTTCATCTTCTAGCGTTGATGATCGACCAAGTTTACGAACTGGTACACAATCTTCTCAGACATCTAGGAAACAAAGAAGATGTTGGTCACCAGAGTTGCATAGAAGATTTGTGAATGCATTGCAACAGCTTGGAGGTTCACAAGTTGCAACTCCCAAGCAGATTAGAGAGCTCATGCAAGTGGATGGTCTCACCAATGACGAAGTGAAGAGTCATTTACAAAAATACCGTCTTCATACACGAAAAGTTCCCACCACTAACGGAGACACATCAAATCAATCAGCCCTTTTACTGGGAGGCTTATGGATGCCCAAAGTTGAACGCGGCGAATCCTCAAACCAGAGCAATTCGGACTCTGGTTCCCCCGAGGGTCCCCTACATTTGACCGGACCCACTGGAGGGACTTCAACTACCGGTGTAGATAGCATGGAAAATGAAGAAGATCGAAAGTCCGAGAGCCAGAGCTGGAAAAGTCACATTCATGCGTCTTGA

Network for GWHGAAZE029974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	255	306	6.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.511
	SRR3591706	second leaf	18.789
	SRR3591707	mature leaf	15.560
	SRR3591708	Shoot apex	10.818
	SRR3591709	Stem	13.099
	SRR3591710	White floral bud	13.188
	SRR3591711	White flower	15.448
	SRR3591712	Green floral bud	12.358
	SRR3591713	Yellow flower	7.568
SRP173429	SRR8316895	Juvenile bud stage	3.830
	SRR8316896	Juvenile bud stage	6.252
	SRR8316897	Juvenile bud stage	2.661
	SRR8316894	Third green stage	5.802
	SRR8316900	Third green stage	22.811
	SRR8316901	Third green stage	15.248
	SRR8316898	Complete white stage	8.903
	SRR8316899	Complete white stage	13.796
	SRR8316903	Complete white stage	12.040
	SRR8316902	Silver flowering stage	5.589
	SRR8316904	Silver flowering stage	7.404
	SRR8316905	Silver flowering stage	5.079
	SRR8316906	Gold flowering stage	8.266
	SRR8316907	Gold flowering stage	10.286
	SRR8316908	Gold flowering stage	10.538
SRP132670	SRR6706286	Control	15.799
	SRR6706287	Light intensity 50%	14.522
	SRR6706288	Light intensity 20%	16.124
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.320
	CNS0095593	Slightly white alabastrum(diploid) 2	11.728
	CNS0095594	Slightly white alabastrum(diploid) 3	9.239
	CNS0095595	Whole white alabastrum(diploid) 2	11.539
	CNS0095596	Whole white alabastrum(diploid) 3	14.554
	CNS0095597	Whole white alabastrum(diploid) 4	14.454
	CNS0095598	Silvery flower (diploied) 1	14.211
	CNS0095599	Silvery flower (diploied) 2	15.339
	CNS0095600	Silvery flower (diploied) 3	13.395
	CNS0095601	Golden flower (diploid) 1	13.477
	CNS0095602	Golden flower (diploid) 2	9.580
	CNS0095603	Golden flower (diploid) 3	11.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.396
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.592
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.380
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.787
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.401
	CNS0095610	Silvery flower (tetraploid) 1	6.869
	CNS0095611	Silvery flower (tetraploid) 2	9.179
	CNS0095612	Silvery flower (tetraploid) 3	7.428
	CNS0095613	Golden flower (tetraploid) 1	5.991
	CNS0095614	Golden flower (tetraploid) 2	5.421
	CNS0095615	Golden flower (tetraploid) 3	3.422
CRA001975	CRR073297	Stem 1	8.554
	CRR073298	Stem 2	12.316
	CRR073299	Stem 3	9.415
	CRR073300	Leaf 1	8.942
	CRR073301	Leaf 2	9.173
	CRR073302	Leaf 3	12.108
	CRR073303	Juvenile bud 1	11.921
	CRR073304	Juvenile bud 2	11.499
	CRR073305	Juvenile bud 3	9.061
	CRR073306	Third green 1	7.480
	CRR073307	Third green 2	6.542
	CRR073308	Third green 3	5.892
	CRR073309	Second white 1	0.810
	CRR073310	Second white 2	1.198
	CRR073311	Second white 3	0.378
	CRR073312	Silver flowering 1	0.763
	CRR073313	Silver flowering 2	1.417
	CRR073314	Silver flowering 3	0.944
	CRR073315	Gold flowering 1	2.969
	CRR073316	Gold flowering 2	1.986
	CRR073317	Gold flowering 3	0.550
	CRR073318	Tawny withering 1	7.086
	CRR073319	Tawny withering 2	6.449
	CRR073320	Tawny withering 3	11.422