Gene detail

Detail information of GWHGAAZE029971

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042358.1	0	Peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase isoform 1 [Theobroma cacao]
COG	YP_007069501.1	1E-65	cyclophilin type peptidyl-prolyl cis-trans isomerase
Swissprot	tr\|Q9C566\|CYP40_ARATH	0	Peptidyl-prolyl cis-trans isomerase CYP40
trEMBL	tr\|A0A061DZT1\|A0A061DZT1_THECC	0	Peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase isoform 1 {ECO:0000313\|EMBL:EOX98190.1}
TAIR10	AT2G15790.1	1E-129	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36024249	36027284	-
GWHAAZE00000009	mRNA	36024249	36027284	-
GWHAAZE00000009	exon	36027123	36027284	-
GWHAAZE00000009	exon	36025979	36026479	-
GWHAAZE00000009	exon	36025703	36025841	-
GWHAAZE00000009	exon	36025514	36025566	-
GWHAAZE00000009	exon	36024515	36024619	-
GWHAAZE00000009	exon	36024249	36024329	-
GWHAAZE00000009	CDS	36027123	36027284	-
GWHAAZE00000009	CDS	36025979	36026479	-
GWHAAZE00000009	CDS	36025703	36025841	-
GWHAAZE00000009	CDS	36025514	36025566	-
GWHAAZE00000009	CDS	36024515	36024619	-
GWHAAZE00000009	CDS	36024249	36024329	-

Transcript Sequence
>GWHTAAZE030005 ACGAGGTGCTATTTAGATATAAGCATAGCAGGAGAGCTTGAAGGTAGGATAGTGGTGGAGCTGTACAACGACGTCGTTCCTAAAACAGCTGATAACTTCAGAGCTCTCTGTACCGGCGAGAAAGGCATTGGTCCAATCACTGGTGTTCCTCTCCATTACAAGGGAGTTCGTTTTCACCGTGTTATCAAAAGTTTTATGGTTGAAGGTGGTGATATATCTGCTGGAGATGGTACTGGGGGAGAGTCCATCTACGGTCAAAAATTTGAAGATGAAAATTTTGAAATGAAACATGAAAGAAAGGGAATTTTGTCAATGGCCAACTCTGGTCCCAACACAAATCGATCCCAGTTTTTCATCACGACGACTTGCACTTCTCATCTCGATGGAAAGCACGTTGTATTCGGGAAGGTTGTTAAAGGAATGGGAGTTATCCGCTCAATTGAGCATGTTCCTATTGGTGAGAATGATTGCCCCTCTCTCGATGTTGTAATCGCAGATTGTGGTGAAATTGCTGAGGGAACAGATGATGGGATCACCAACCTTTTCAATGATGGTGATATGTATCCTGATTGGCCAGCTGACCTTGATGACAATTCAACTGAGCTTTCTTGGTGGATGAATGCTGTTGATTCTGTGAAGGCTTTTGGAAATCAACATTTCAAGCCCCATATCTGGCTACACCTATCGTTGAATCCTATCAATTGTTGTCTGCAGAAGCAAGACTATAAGATGGCCCTCAAAAAATATCGGAAGGCCTTGCGTTATTTGGATGTCTGCTGGGAAAAGGAAGGGATTGATGAAGAGAAGAGTTCATGTTTGAGAAAGATGAAGTCGCAGATATTCACCAACAGTTCGGCTTGTAAGTTGAAATTAGGAGATTTGAAAGGAGCACTCTTGGACACTGACTTTGCAATGCGTGATGGAGAGAACAATGTGAAGGCTCTGTTTCGCCAAGGTCAGGCGTACGTGGCACTTAAAGATATAGATGCTGCAGCCGAGAGTTTCAAGAAGGCACTGGAGTTGGAGCCAAATGATGGTTAG

Network for GWHGAAZE029971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00160.22	Pro_isomerase	6	168	4.60E-47
PF00515.29	TPR_1	312	345	3.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05864	PPID, CYPD	Necroptosis	map04217
K05864	PPID, CYPD	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0000413	biological_process	protein peptidyl-prolyl isomerization
GO:0003755	molecular_function	peptidyl-prolyl cis-trans isomerase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.146
	SRR3591706	second leaf	1.409
	SRR3591707	mature leaf	2.272
	SRR3591708	Shoot apex	9.393
	SRR3591709	Stem	29.693
	SRR3591710	White floral bud	16.427
	SRR3591711	White flower	23.816
	SRR3591712	Green floral bud	5.680
	SRR3591713	Yellow flower	10.262
SRP173429	SRR8316895	Juvenile bud stage	18.315
	SRR8316896	Juvenile bud stage	11.282
	SRR8316897	Juvenile bud stage	4.589
	SRR8316894	Third green stage	3.500
	SRR8316900	Third green stage	2.867
	SRR8316901	Third green stage	3.850
	SRR8316898	Complete white stage	4.216
	SRR8316899	Complete white stage	8.846
	SRR8316903	Complete white stage	6.527
	SRR8316902	Silver flowering stage	4.373
	SRR8316904	Silver flowering stage	6.656
	SRR8316905	Silver flowering stage	2.000
	SRR8316906	Gold flowering stage	5.158
	SRR8316907	Gold flowering stage	6.335
	SRR8316908	Gold flowering stage	7.107
SRP132670	SRR6706286	Control	7.486
	SRR6706287	Light intensity 50%	6.889
	SRR6706288	Light intensity 20%	6.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.474
	CNS0095593	Slightly white alabastrum(diploid) 2	7.604
	CNS0095594	Slightly white alabastrum(diploid) 3	4.331
	CNS0095595	Whole white alabastrum(diploid) 2	8.410
	CNS0095596	Whole white alabastrum(diploid) 3	0.369
	CNS0095597	Whole white alabastrum(diploid) 4	2.945
	CNS0095598	Silvery flower (diploied) 1	28.460
	CNS0095599	Silvery flower (diploied) 2	24.350
	CNS0095600	Silvery flower (diploied) 3	9.283
	CNS0095601	Golden flower (diploid) 1	36.128
	CNS0095602	Golden flower (diploid) 2	11.313
	CNS0095603	Golden flower (diploid) 3	10.871
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.161
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.154
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.981
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.694
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.041
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.128
	CNS0095610	Silvery flower (tetraploid) 1	11.362
	CNS0095611	Silvery flower (tetraploid) 2	24.744
	CNS0095612	Silvery flower (tetraploid) 3	16.528
	CNS0095613	Golden flower (tetraploid) 1	7.115
	CNS0095614	Golden flower (tetraploid) 2	14.445
	CNS0095615	Golden flower (tetraploid) 3	3.957
CRA001975	CRR073297	Stem 1	19.230
	CRR073298	Stem 2	11.632
	CRR073299	Stem 3	12.854
	CRR073300	Leaf 1	2.958
	CRR073301	Leaf 2	3.785
	CRR073302	Leaf 3	2.481
	CRR073303	Juvenile bud 1	3.016
	CRR073304	Juvenile bud 2	0.546
	CRR073305	Juvenile bud 3	4.739
	CRR073306	Third green 1	2.312
	CRR073307	Third green 2	1.753
	CRR073308	Third green 3	1.362
	CRR073309	Second white 1	3.036
	CRR073310	Second white 2	4.680
	CRR073311	Second white 3	2.649
	CRR073312	Silver flowering 1	1.095
	CRR073313	Silver flowering 2	1.948
	CRR073314	Silver flowering 3	1.183
	CRR073315	Gold flowering 1	1.758
	CRR073316	Gold flowering 2	1.507
	CRR073317	Gold flowering 3	0.646
	CRR073318	Tawny withering 1	6.899
	CRR073319	Tawny withering 2	7.582
	CRR073320	Tawny withering 3	4.382