Detail information of GWHGAAZE029956


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008373161.10PREDICTED: uncharacterized protein LOC103436505 [Malus domestica]
trEMBLtr|A0A061E1P1|A0A061E1P1_THECC0Autophagy 2, putative isoform 1 {ECO:0000313|EMBL:EOX98231.1}
TAIR10AT3G19190.10autophagy 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3585054635860106-
GWHAAZE00000009mRNA3585054635860106-
GWHAAZE00000009exon3585054635850803-
GWHAAZE00000009exon3585098435851186-
GWHAAZE00000009exon3585198935852162-
GWHAAZE00000009exon3585224935852309-
GWHAAZE00000009exon3585241235852491-
GWHAAZE00000009exon3585278535852996-
GWHAAZE00000009exon3585374435853856-
GWHAAZE00000009exon3585395435855710-
GWHAAZE00000009exon3585588435856498-
GWHAAZE00000009exon3585657335856891-
GWHAAZE00000009exon3585702035857186-
GWHAAZE00000009exon3585801635858164-
GWHAAZE00000009exon3585848535859476-
GWHAAZE00000009exon3585990335860106-
GWHAAZE00000009CDS3585990335860106-
GWHAAZE00000009CDS3585848535859476-
GWHAAZE00000009CDS3585801635858164-
GWHAAZE00000009CDS3585702035857186-
GWHAAZE00000009CDS3585657335856891-
GWHAAZE00000009CDS3585588435856498-
GWHAAZE00000009CDS3585395435855710-
GWHAAZE00000009CDS3585374435853856-
GWHAAZE00000009CDS3585278535852996-
GWHAAZE00000009CDS3585241235852491-
GWHAAZE00000009CDS3585224935852309-
GWHAAZE00000009CDS3585198935852162-
GWHAAZE00000009CDS3585098435851186-
GWHAAZE00000009CDS3585054635850803-
Transcript Sequence

Network for GWHGAAZE029956

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12624.8Chorein_N201139.70E-12
PF13329.7ATG2_CAD106911381.50E-07
PF09333.12ATG_C166817495.00E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17906ATG2 Autophagy - animal map04140
Autophagy - yeastmap04138
Autophagy - othermap04136

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.623
SRR3591706second leaf13.162
SRR3591707mature leaf20.642
SRR3591708Shoot apex15.018
SRR3591709Stem28.959
SRR3591710White floral bud31.552
SRR3591711White flower48.576
SRR3591712Green floral bud16.897
SRR3591713Yellow flower53.069
SRP173429 SRR8316895Juvenile bud stage 8.966
SRR8316896Juvenile bud stage 12.831
SRR8316897Juvenile bud stage 5.714
SRR8316894Third green stage 5.940
SRR8316900Third green stage 11.710
SRR8316901Third green stage 13.410
SRR8316898Complete white stage 4.805
SRR8316899Complete white stage 18.613
SRR8316903Complete white stage 15.231
SRR8316902Silver flowering stage13.042
SRR8316904Silver flowering stage22.476
SRR8316905Silver flowering stage10.243
SRR8316906Gold flowering stage 39.421
SRR8316907Gold flowering stage 32.148
SRR8316908Gold flowering stage 40.361
SRP132670SRR6706286Control12.147
SRR6706287Light intensity 50%13.481
SRR6706288Light intensity 20%14.301
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.110
CNS0095593Slightly white alabastrum(diploid) 26.652
CNS0095594Slightly white alabastrum(diploid) 37.055
CNS0095595Whole white alabastrum(diploid) 25.535
CNS0095596Whole white alabastrum(diploid) 34.583
CNS0095597Whole white alabastrum(diploid) 46.059
CNS0095598Silvery flower (diploied) 113.924
CNS0095599Silvery flower (diploied) 210.823
CNS0095600Silvery flower (diploied) 337.970
CNS0095601Golden flower (diploid) 112.016
CNS0095602Golden flower (diploid) 241.177
CNS0095603Golden flower (diploid) 340.228
CNS0095604Slightly white alabastrum(tetraploid) 18.890
CNS0095605Slightly white alabastrum(tetraploid) 26.916
CNS0095606Slightly white alabastrum(tetraploid) 321.442
CNS0095607Whole white alabastrum(tetraploid) 16.099
CNS0095608Whole white alabastrum(tetraploid) 25.562
CNS0095609Whole white alabastrum(tetraploid) 313.003
CNS0095610Silvery flower (tetraploid) 144.669
CNS0095611Silvery flower (tetraploid) 242.005
CNS0095612Silvery flower (tetraploid) 339.373
CNS0095613Golden flower (tetraploid) 122.399
CNS0095614Golden flower (tetraploid) 235.739
CNS0095615Golden flower (tetraploid) 387.857
CRA001975CRR073297Stem 111.429
CRR073298Stem 212.255
CRR073299Stem 38.907
CRR073300Leaf 112.855
CRR073301Leaf 210.838
CRR073302Leaf 39.090
CRR073303Juvenile bud 19.266
CRR073304Juvenile bud 26.743
CRR073305Juvenile bud 314.745
CRR073306Third green 18.401
CRR073307Third green 26.611
CRR073308Third green 39.748
CRR073309Second white 19.515
CRR073310Second white 214.688
CRR073311Second white 321.851
CRR073312Silver flowering 118.997
CRR073313Silver flowering 217.485
CRR073314Silver flowering 319.542
CRR073315Gold flowering 19.276
CRR073316Gold flowering 217.843
CRR073317Gold flowering 37.953
CRR073318Tawny withering 112.886
CRR073319Tawny withering 211.216
CRR073320Tawny withering 39.423