Gene detail

Detail information of GWHGAAZE029949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAB52254.1	0	Fuct c3 protein [Vigna radiata var. radiata]
Swissprot	tr\|Q9FX97\|FUT12_ARATH	6E-174	Putative fucosyltransferase-like protein
trEMBL	tr\|Q9ST51\|Q9ST51_VIGRR	0	Fuct c3 protein {ECO:0000313\|EMBL:CAB52254.1}
TAIR10	AT3G19280.1	2E-124	fucosyltransferase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35781160	35790455	+
GWHAAZE00000009	mRNA	35781160	35790455	+
GWHAAZE00000009	exon	35781160	35781495	+
GWHAAZE00000009	exon	35783239	35783399	+
GWHAAZE00000009	exon	35785210	35785451	+
GWHAAZE00000009	exon	35787121	35787225	+
GWHAAZE00000009	exon	35787957	35788113	+
GWHAAZE00000009	exon	35788679	35788880	+
GWHAAZE00000009	exon	35790089	35790234	+
GWHAAZE00000009	exon	35790383	35790455	+
GWHAAZE00000009	CDS	35781160	35781495	+
GWHAAZE00000009	CDS	35783239	35783399	+
GWHAAZE00000009	CDS	35785210	35785451	+
GWHAAZE00000009	CDS	35787121	35787225	+
GWHAAZE00000009	CDS	35787957	35788113	+
GWHAAZE00000009	CDS	35788679	35788880	+
GWHAAZE00000009	CDS	35790089	35790234	+
GWHAAZE00000009	CDS	35790383	35790455	+

Transcript Sequence
>GWHTAAZE029983 ATGGTCCGAAATCTCCGTTTCACTAGGCCAAATTCCACCCAAGACGATTTATCTAATGCCAATGTAGCTGCTTCGTCGAGTAATACAAATAAGAAGAGATGGCGGAATTTGCTTCCCTTGTTGGTAGCCCTAGTCGTTATTGCAGAAATCGCTTTTCTAGGTCGACTCGACATGGCAGAGAACGCTGCCCTGGTCAACTCGGTGGCCGAGTCGTTCTACCAGTATACGACCTCCTTACGGCCCGAAACTTGTGAGGAGTGGCTCCAGAGAAAAGACGCTTTCGTTTATTCTAGAGATTTTGAGAAGAGTCCCATACTTGTTACTGGAGCAGCACATGACTTTCCATCTTGCTCTGTGGGATGTAAGTTTGATGCTGGTGCATTTAAGAACCCTGATGCTGTATTTGGATTGAGTGAAGAAGATGAGATTGCTAGTGTGCTTCGATCAATGGAATCATCTCAATACTATGCCGATAACAACCTTGCTAGGGCACGACGGATGGGATATAACATTACTATGACAACTAGTCTATCGTCAGATGTTCCCGTTGGGTATTTTTCTTGGGCCGAGTATGACATAATGGCCCCTTTGGAACCAAAGACCGAGAGTGCACTGGCAGCTGCTTTCATTTCTAATTGTGGTGCTCGCAACTTTCGCTTAAAAGCTCTTAAGGCACTTATGAAGTTGGATATTAAGATTGATTCTTATGGTGCTTGTCAGCGAAACCGCCATGTAAGAGTGGATAAAGTTTTCGCTCTGAAGCACTACAAATTTAGCTTGGCTTTTGAGAATTCCAACGAGGAAGACTATGTCACTGAAAAATTCTTCCAGTCTCTTGTTGCTGGATCTGTTCCTGTGGTTGTTGGTGCTCCAAATATCCAAGATTTTGCTCCTTCGACCAATTCAGTTTTACTTATTCAGGATATAAAAGATGTTGTTCCAGTTGCTAAAACCATGAAATATCTGTCTGAAAATCCTGATGCATACAATCAATCGCTGAGGTGGAAGTTTGAGGGCCCATCTGATTCTTTCAAGTCCCTCTTAGATATGGCAGCCGTTCACTCATCTTGCCGTCTGTGCATTCACCTCGCAACAATGATCCGTGAGAAAGAAGAAAGGAGCCCTGTTGTCCCATTTCGCCCTTGCAAATGTAGCAGAGGCAAAGACACTGTCTTACCATGCATATGTACGAGAAAGGGGGAGATCAAAGAATTTAACTCTGGAAGCCCTAGAATCTGCTGTGCTGTTGAAGTTCAAGTCATTGAACCATGTACCCATTTGGAAACTGGAAAGGCCCGATATCCTAAGAGGAGGGGACGACCTCAAAATTTACCGAATACATCCCCTTGGGACCTTTTTCAGCACTCTGCTGAAGCTTTTGCAAACGGGTTCATGTTAAAGTGCAGCATTTCTTTAATCTAA

Network for GWHGAAZE029949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00852.20	Glyco_transf_10	204	366	2.60E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00753	E2.4.1.214	Metabolic pathways	map01100
K00753	E2.4.1.214	Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0016020	cellular_component	membrane
GO:0008417	molecular_function	fucosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.869
	SRR3591706	second leaf	0.517
	SRR3591707	mature leaf	0.662
	SRR3591708	Shoot apex	1.348
	SRR3591709	Stem	3.350
	SRR3591710	White floral bud	5.977
	SRR3591711	White flower	6.915
	SRR3591712	Green floral bud	7.117
	SRR3591713	Yellow flower	5.239
SRP173429	SRR8316895	Juvenile bud stage	4.017
	SRR8316896	Juvenile bud stage	6.818
	SRR8316897	Juvenile bud stage	3.645
	SRR8316894	Third green stage	2.442
	SRR8316900	Third green stage	4.964
	SRR8316901	Third green stage	4.900
	SRR8316898	Complete white stage	1.076
	SRR8316899	Complete white stage	4.754
	SRR8316903	Complete white stage	1.590
	SRR8316902	Silver flowering stage	0.959
	SRR8316904	Silver flowering stage	1.148
	SRR8316905	Silver flowering stage	0.763
	SRR8316906	Gold flowering stage	2.353
	SRR8316907	Gold flowering stage	2.474
	SRR8316908	Gold flowering stage	3.931
SRP132670	SRR6706286	Control	3.286
	SRR6706287	Light intensity 50%	3.148
	SRR6706288	Light intensity 20%	3.325
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.359
	CNS0095593	Slightly white alabastrum(diploid) 2	8.160
	CNS0095594	Slightly white alabastrum(diploid) 3	7.754
	CNS0095595	Whole white alabastrum(diploid) 2	7.110
	CNS0095596	Whole white alabastrum(diploid) 3	6.501
	CNS0095597	Whole white alabastrum(diploid) 4	5.450
	CNS0095598	Silvery flower (diploied) 1	3.783
	CNS0095599	Silvery flower (diploied) 2	3.135
	CNS0095600	Silvery flower (diploied) 3	3.194
	CNS0095601	Golden flower (diploid) 1	4.937
	CNS0095602	Golden flower (diploid) 2	3.879
	CNS0095603	Golden flower (diploid) 3	3.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.724
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.764
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.561
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.620
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.846
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.584
	CNS0095610	Silvery flower (tetraploid) 1	3.964
	CNS0095611	Silvery flower (tetraploid) 2	4.477
	CNS0095612	Silvery flower (tetraploid) 3	3.969
	CNS0095613	Golden flower (tetraploid) 1	1.719
	CNS0095614	Golden flower (tetraploid) 2	3.013
	CNS0095615	Golden flower (tetraploid) 3	2.327
CRA001975	CRR073297	Stem 1	4.289
	CRR073298	Stem 2	4.293
	CRR073299	Stem 3	4.452
	CRR073300	Leaf 1	4.642
	CRR073301	Leaf 2	4.749
	CRR073302	Leaf 3	5.252
	CRR073303	Juvenile bud 1	4.637
	CRR073304	Juvenile bud 2	2.157
	CRR073305	Juvenile bud 3	3.989
	CRR073306	Third green 1	0.527
	CRR073307	Third green 2	0.764
	CRR073308	Third green 3	0.967
	CRR073309	Second white 1	0.625
	CRR073310	Second white 2	1.561
	CRR073311	Second white 3	1.039
	CRR073312	Silver flowering 1	0.976
	CRR073313	Silver flowering 2	0.827
	CRR073314	Silver flowering 3	1.359
	CRR073315	Gold flowering 1	0.716
	CRR073316	Gold flowering 2	1.936
	CRR073317	Gold flowering 3	1.502
	CRR073318	Tawny withering 1	4.380
	CRR073319	Tawny withering 2	3.979
	CRR073320	Tawny withering 3	2.404