Gene detail

Detail information of GWHGAAZE029946

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006346401.1	0	PREDICTED: probable receptor-like protein kinase At1g49730-like isoform X1 [Solanum tuberosum]
COG	YP_001958461.1	6E-31	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FX99\|Y1497_ARATH	0	Probable receptor-like protein kinase At1g49730 (Precursor)
trEMBL	tr\|M1CF99\|M1CF99_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400066269}
TAIR10	AT3G19300.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35764223	35768078	+
GWHAAZE00000009	mRNA	35764223	35768078	+
GWHAAZE00000009	exon	35764223	35764802	+
GWHAAZE00000009	exon	35765186	35765464	+
GWHAAZE00000009	exon	35765562	35765820	+
GWHAAZE00000009	exon	35766080	35766132	+
GWHAAZE00000009	exon	35766309	35766376	+
GWHAAZE00000009	exon	35766505	35766594	+
GWHAAZE00000009	exon	35767126	35767210	+
GWHAAZE00000009	exon	35767540	35768078	+
GWHAAZE00000009	CDS	35764223	35764802	+
GWHAAZE00000009	CDS	35765186	35765464	+
GWHAAZE00000009	CDS	35765562	35765820	+
GWHAAZE00000009	CDS	35766080	35766132	+
GWHAAZE00000009	CDS	35766309	35766376	+
GWHAAZE00000009	CDS	35766505	35766594	+
GWHAAZE00000009	CDS	35767126	35767210	+
GWHAAZE00000009	CDS	35767540	35768078	+

Transcript Sequence
>GWHTAAZE029980 ATGCTGGTTATTTCTTCAATTTGTTCAGATTGCCCCTTAAATTTGAGTGGGTCCAACTTTACACTGGCCGCTTCCATCTGCTCTAATAAAGAAGATAGAGGGAAGTGTTGCCGCTACATTAACGCTTTAATTGCCGTTTCTATTGCTCGTTATGCAAATGCAACCAGCAACCTCGGAGTTTCTTCAGATTTATCTCAAATTTGTCTCGACGCCATATCACAAACTTTACAACTGTATGGAGTAACCCGAAACGCAACAGTTTTCTGCGGGTTTGGGACGAAAATTCCCGTTAATTATGATTGTCAAAGTCGAACAACTGTGACCCAGATGCTTCAATCTCCGAAATTTACAGACGTCTCAAAAAGTTGCAAATTACCATTGTTGGCACAAAATGATTGTCGAAGATGTTTGAATGCTGGCATTTTGTATCTTCGTAATCTGATGGGAGCTGTTGATAATATGACGTTGAGTACTTGTCGGGATGCCACCTTTGCTGCACTTGCAAGCCAAGTTGACAACACGTCGGCTATTGACATTGCTGCCTGTTTTTTCGGGGTTCAAGGGCTTATGAATGCACCAGTTTTAGAACCATCAACAGCTTCACCCAAGGCATCTCCAAGTCCACTGATTTCGGCTAGTCCAAGTCAACTCTCATTCAACACTGCTAAAGAAAATCACCACCCATATCATCTCTCATTGGTTCCAATTATTGGACTAGCAGTTGCAGCTATGGCTATTATAATGCTTGTATTTGTCATATTTCTTATTCACAGAAAAAGTGGAGAGCTAGAGGATTCCGATACCATAGATAAGATCTCTTCGAAAACCTTTTCTCAGCCTACAAGAAAATTTCAAGAAGGTGCTTCGTATATGTTTAGGAAATTCAGCTATAGGGAGACAAAAAAAGCCACAGACAATTTCAGCACCATAATCGGACAAGGAGGATTTGGCACGGTGTACAAAGCTAAGTTTAGCGACGGTTTAGTGGCGGTGAAGAGAATGAACAGAGTTTCAGAGCAGGCGGAGGATGAGTTTTGCAGAGAAATAGAGCTTCTTGCTAGGCTGCACCATCGTCACCTCGTTGCTTTAAGAGGCTTTTGTATTGAAAGACATGAGAGGTTTCTCATGTATGATTATATGGTGAACGGAAGCTTAAAAGACCATCTGCACACTCCAGGTAGAACTCCTTTGAGTTGGCGGACTAGAATTCAAATTTCCATTGACGTGGCAAATGCTTTGGAGTACCTCCATTTCTACTGTGATCCTCCTCTTTGCCACAGAGACATAAAATCCAGCAATATTTTACTGGATGAGAATTTCGTTGCAAAGGTTGCCGATTTTGGCCTTGCTCATGCTTCAACTGACGGTTCCATTTGCTTTGAGCCGGTAAACACTGACATAAGGGGAACTCCAGGTTATATGGACCCCGAGTACATAACCACCCAAGAGCTCACCGAGAAGAGCGATGTCTACAGTTACGGGGTCGTACTATTAGAGCTCATAACAGGAAGACGAGCAATACACGAAAACAGGAACTTAGTAGAGTGGTCCCAAGAATTCACAACATCTGAATCCAGGCTACCAGAGCTCGTGGACCCCAGCATTGGTGATTCATTTGACTTAGATCAACTTCAAACACTTGTAACGATTGTAAGGTGGTGCACCCAAAGGGAAGGAAGATCGAGGCCGTCGATTAAGCAGGTTCTCAGGCTTTTATATGAATGTGCAGACCCAATGCACGGCGGGTTTGTCGAAGCAGTAGAAGATGAAGAGTATGAAGAAGGGCGGGGGAGGACGAGTAAAGGTAAAATGCATAGGGGAGATGCAATTTTTCATAGTTGGGATGGAAGGTGCCTTGCTTCTTCCTCAAGTACATCAAGATCTTATTGTAGTAGAAGTTTTCTGCTTGAAACCGGGTCCCCGCAATCTCCTCTCAATATACCCTCCATTTGA

Network for GWHGAAZE029946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0166	Protein Kinases RLK-Pelle_URK-1 family Protein Kinases RLK-Pelle_URK-1 Protein Kinases RLK-Pelle_LRR-VI-1 family Protein Kinases RLK-Pelle_LRR-VI-1 GO:0006468 protein phosphorylation GOslim:biological_process

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF19160.1	SPARK	9	141	1.40E-17
PF00069.26	Pkinase	309	570	1.20E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_URK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.263
	SRR3591706	second leaf	3.608
	SRR3591707	mature leaf	3.170
	SRR3591708	Shoot apex	9.520
	SRR3591709	Stem	7.406
	SRR3591710	White floral bud	3.167
	SRR3591711	White flower	2.305
	SRR3591712	Green floral bud	5.253
	SRR3591713	Yellow flower	1.416
SRP173429	SRR8316895	Juvenile bud stage	9.451
	SRR8316896	Juvenile bud stage	7.991
	SRR8316897	Juvenile bud stage	3.686
	SRR8316894	Third green stage	3.110
	SRR8316900	Third green stage	5.896
	SRR8316901	Third green stage	5.515
	SRR8316898	Complete white stage	0.278
	SRR8316899	Complete white stage	6.416
	SRR8316903	Complete white stage	0.758
	SRR8316902	Silver flowering stage	0.170
	SRR8316904	Silver flowering stage	0.106
	SRR8316905	Silver flowering stage	0.199
	SRR8316906	Gold flowering stage	0.467
	SRR8316907	Gold flowering stage	0.495
	SRR8316908	Gold flowering stage	0.234
SRP132670	SRR6706286	Control	6.246
	SRR6706287	Light intensity 50%	7.228
	SRR6706288	Light intensity 20%	7.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.795
	CNS0095593	Slightly white alabastrum(diploid) 2	10.656
	CNS0095594	Slightly white alabastrum(diploid) 3	6.913
	CNS0095595	Whole white alabastrum(diploid) 2	4.520
	CNS0095596	Whole white alabastrum(diploid) 3	3.105
	CNS0095597	Whole white alabastrum(diploid) 4	4.018
	CNS0095598	Silvery flower (diploied) 1	7.812
	CNS0095599	Silvery flower (diploied) 2	8.094
	CNS0095600	Silvery flower (diploied) 3	3.724
	CNS0095601	Golden flower (diploid) 1	10.196
	CNS0095602	Golden flower (diploid) 2	5.855
	CNS0095603	Golden flower (diploid) 3	5.457
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.087
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.520
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.077
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.634
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.778
	CNS0095610	Silvery flower (tetraploid) 1	0.289
	CNS0095611	Silvery flower (tetraploid) 2	1.132
	CNS0095612	Silvery flower (tetraploid) 3	0.248
	CNS0095613	Golden flower (tetraploid) 1	0.179
	CNS0095614	Golden flower (tetraploid) 2	0.406
	CNS0095615	Golden flower (tetraploid) 3	0.001
CRA001975	CRR073297	Stem 1	10.738
	CRR073298	Stem 2	10.468
	CRR073299	Stem 3	5.647
	CRR073300	Leaf 1	8.740
	CRR073301	Leaf 2	7.395
	CRR073302	Leaf 3	4.919
	CRR073303	Juvenile bud 1	4.161
	CRR073304	Juvenile bud 2	2.080
	CRR073305	Juvenile bud 3	5.858
	CRR073306	Third green 1	0.070
	CRR073307	Third green 2	0.203
	CRR073308	Third green 3	0.181
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.341
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.036
	CRR073313	Silver flowering 2	0.004
	CRR073314	Silver flowering 3	0.278
	CRR073315	Gold flowering 1	0.542
	CRR073316	Gold flowering 2	3.004
	CRR073317	Gold flowering 3	1.322
	CRR073318	Tawny withering 1	6.122
	CRR073319	Tawny withering 2	8.885
	CRR073320	Tawny withering 3	7.827