Gene detail

Detail information of GWHGAAZE029938

Functional Annotation

Database	Orthologs	Annotation
Nr	KDO59771.1	hypothetical protein CISIN_1g001208mg [Citrus sinensis]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|A0A067F9B7\|A0A067F9B7_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO59771.1}
TAIR10	AT4G34100.2	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35663913	35671626	+
GWHAAZE00000009	mRNA	35663913	35671626	+
GWHAAZE00000009	exon	35663913	35664340	+
GWHAAZE00000009	exon	35666026	35666718	+
GWHAAZE00000009	exon	35667700	35668467	+
GWHAAZE00000009	exon	35668551	35668762	+
GWHAAZE00000009	exon	35668871	35669230	+
GWHAAZE00000009	exon	35670138	35670295	+
GWHAAZE00000009	exon	35670389	35670552	+
GWHAAZE00000009	exon	35670640	35670786	+
GWHAAZE00000009	exon	35671107	35671333	+
GWHAAZE00000009	exon	35671452	35671626	+
GWHAAZE00000009	five_prime_UTR	35663913	35663992	+
GWHAAZE00000009	CDS	35663993	35664340	+
GWHAAZE00000009	CDS	35666026	35666718	+
GWHAAZE00000009	CDS	35667700	35668467	+
GWHAAZE00000009	CDS	35668551	35668762	+
GWHAAZE00000009	CDS	35668871	35669230	+
GWHAAZE00000009	CDS	35670138	35670295	+
GWHAAZE00000009	CDS	35670389	35670552	+
GWHAAZE00000009	CDS	35670640	35670786	+
GWHAAZE00000009	CDS	35671107	35671333	+
GWHAAZE00000009	CDS	35671452	35671626	+

Transcript Sequence
>GWHTAAZE029972 ACCAACTTTCCTCCCAAACCCTAGAAATTGAGACAGACGTACGAGGGAGAGAGAAAGTGCCCAATCTCCGACCGCCACAGATGGAGATCGCACCGGCGGTGCTGGCCTCGCACGACGGCGGTGATGAATCCTCGATTCCCTCACCCGTCGTCAATCCGTCCGCCGCTTCTACCTCTTCGTCTTCGCCTTCGTCTCCTTGTGGTTTGAATGATAGTAATAAGAACAAGGTGAATCTTAATAATAATGTTTCCAATTCGAGCAAGTATGATGATGACGATGAGGAGGAGGATGTGTGCCGGATCTGCCGGAACCCCGGTGATGCCGAGAATCCTCTCCGGTACCCCTGCGCGTGTAGCGGGAGCATCAAGTTTGTTCACCAAGACTGTCTCCTTCAGTGGCTTAATCACAGTAACGCTCGCCAATGCGAGGTCTGCAAACATGCTTTTTCGTTCTCCCCTGTTTATGCTGAGAATGCTCCAGCAAGGCTTCCTTTTCAGGAGTTTGTAGTTGGGATGGCTATGAAAGCATGCCATGTCTTGCAATTCTTTTTGCGCCTTAGCTTTGTACTATCTGTTTGGCTTCTAATCATACCCTTTATTACATTTTGGATATGGCGATTGGCTTTTGTGAGAAGTTTTGGCGAAGCACAAAGACTGTTCTTGAGTCATATTTCTACTACGGTTATTCTTACCGATTGCCTACATGGGTTCTTACTCTCTGCAAGCATCGTGTTCATATTTCTTGGGGCCACTTCTCTCAGGGACTACTTTAGACATTTAAGAGAAATTGGAGGGCAGGATGCTGACAGAGAAGATGAAGCAGACAGAAATGGTGCTCGTGGTGCAAGACGACCTCCTGTACAAGTTAATAGAAATTTTGTTGGTGAGGGAAATGGTGATGATGCTAATGGAGCACAAGGAATTGCTGGGGCTGGTCAGATGATAAGAAGGAATGCAGAGAATGTTGCTGCCAGGTGGGAGATGCAGGCAGCTCGCCTTGAGGCTCATGTTGAGCAGATGTTTGATGGTTTAGATGATGCTGATGGAGCAGAGGATGTACCCTTTGACGAGCTAGTAGGAATGCAGGGGCCTGTTTTTCATCTGGTGGAAAATGCATTCACCGTTCTTGCAAGCAATATGATATTCCTTGGAGTTGTAATATTTGTGCCCTTCTCACTAGGACGGATCATACTCTATTATTTGTCATGGATTTTGTCCTCGGCTACCAGTCCAATGTTGTCTAAAGTTGTACCGCTTACAGAATCGGCTCTTTCCTTGGCGAATATCACATTGAAGAATGCATTCACTGCAGTTGAGAATTTGACATCTAATAACCAAGAAAACAATCTGCTTGACCAGGTTGGGGAAATGTTGACTGGAAATGCTACGGGACAGACTGAAGCATTGAATAACGTTACCACACCACTTTCGGCTGATCTCCTGAAAGGGGCATCTATTGGGGCATCACGGCTTTCTGATGTTACAACTCTTGCTGTTGGCTATATGTTTATATTCTCTTTGGTTGTTTTCTACCTTGGAATTGTTGCATTAATTCGATACACTAAAGGTGAGCCTTTGACCATGGGGAGGTTCTATGGTATTGCTTCAATTGCAGAGACAATTCCATCCCTCTTCAGGCAGTTCTTGGCAGCGATGAGGCACCTGATGACTATGATAAAGGTTGCTTTTCTTCTGGTTATTGAACTTGGGGTTTTCCCTTTGATGTGCGGATGGTGGTTGGATGTTTGTACCATAAGGATGTTTGGAAAGTCAATTGCGCAGAGAGTTGAGTTCTTCTCTGTCTCTCCATTAGCAAGCTCCTTGGTTCATTGGGTTGTGGGGATTGTATACATGCTACAAATAAGCATTTTTGTTAGCCTTCTTCGAGGGGTTTTGCGCAATGGAGTTCTTTACTTCCTTCGTGATCCAGCTGACCCTAATTACAATCCATTCCGTGATTTGATTGATGATCCTGTACACAAGCATGCTCGTAGGGTCCTTTTGTCTGTGGCTGTTTATGGAAGTCTGATAGTGATGCTGGTGTTCTTGCCTGTTAAACTTGCCATGCGAATGGCTCCCTCCATTTTTCCTCTTGATATATCTGTATCTGATCCATTTACAGAAATTCCTGCCGACATGCTGCTCTTTCAAATCTGCATTCCATTTGCTATTGAGCATTTTAAGTTGCGGACAACAATCAAATCTCTTCTCCGCTATTGGTTTACTGCAGTTGGGTGGGCACTTGGATTAACAGATTTCTTACTGCCCAGACCTGAGGATAACGGGGCTCAGGATAATGGAAACGGGGAGCCACTAAGGCAGGATAGACTACATGCTCAACTAGGTGGACAAGATCGGGCCTTAGGGCTTGTGGCTCACGATGACTTGAACAGAGCTAGGCATGTGGCCCCAAATGCTGATCTTTCAGAAGAGTATGATGGTGATGAACAATCTGAGTCAGAGTATGGCTTTGTGCTTCGTATTGTGCTGTTGCTTGTGGTGGCTTGGATGACTCTTCTTGTTTTCAATTCTGCCTTAATAGTTGTACCAATTTCACTTGGCCGAGCACTCTTCAATGCTGTCCCGCTTCTTCCAATAACACATGGCATCAAGTGCAACGATCTATACGCTTTCATCATTGGAAGCTATGTCATTTGGACTGCTGTAGCTGGAGCCCGCTATTCAATCGAGCACATTAAAACAGGAAGGGCTACAGTGTTACTGGGTCACATTTGGAAATGGTGTGGCATCGTTTTGAAGAGTTCTGCACTGTTGTCTATTTGGATATTTGTCATCCCAGTGTTAATTGGATTGCTCTTTGAACTTCTGGTGATTGTGCCAATGAGAGTGCCTGTGGATGAAAGCCCGGTTTTCCTTCTGTATCAGGATTGGGCTTTGGGGCTCATTTTTCTTAAGATCTGGACTAGACTGGTTATGCTGGATCACATGATGCCCCTAGTGGATGAGAGCTGGCGATTAAAATTCGAAAGGGTGAGAGAAGATGGTTTCTCCAGGCTGCAAGGCTTTTGGGTGCTGCGGGAGATAGTTTTACCCATCATCATGAAACTCCTAACCGCCCTATGCGTCCCCTACGTTCTAGCTAGAGGGGTCTTCCCGGTTTTGGGGTACCCACTAGTGGTCAACTCGGCCGTATACCGGCTACATAACTTTGGTGAAGATAAAGTGGTGAGAGAGAATGAAGCAGCGATTGCTTCAGAGGGACTGAGCTCTAATGAAGAAGGAAATGTTGGATTATTAGTTGGTAGTGAAGGGGAAGGTGAAGTTGTTGATGTTGGGATTAGGCAGAGGCGTGCTATCCAGCAGGACGCGTGA

Network for GWHGAAZE029938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12906.8	RINGv	72	118	1.40E-15

Protein Sequence

>GWHPAAZE029956
MEIAPAVLASHDGGDESSIPSPVVNPSAASTSSSSPSSPCGLNDSNKNKVNLNNNVSNSSKYDDDDEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEADRNGARGARRPPVQVNRNFVGEGNGDDANGAQGIAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILYYLSWILSSATSPMLSKVVPLTESALSLANITLKNAFTAVENLTSNNQENNLLDQVGEMLTGNATGQTEALNNVTTPLSADLLKGASIGASRLSDVTTLAVGYMFIFSLVVFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSIAQRVEFFSVSPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNGAQDNGNGEPLRQDRLHAQLGGQDRALGLVAHDDLNRARHVAPNADLSEEYDGDEQSESEYGFVLRIVLLLVVAWMTLLVFNSALIVVPISLGRALFNAVPLLPITHGIKCNDLYAFIIGSYVIWTAVAGARYSIEHIKTGRATVLLGHIWKWCGIVLKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRLKFERVREDGFSRLQGFWVLREIVLPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRLHNFGEDKVVRENEAAIASEGLSSNEEGNVGLLVGSEGEGEVVDVGIRQRRAIQQDA

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10661	MARCH6, DOA10	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.061
	SRR3591706	second leaf	31.739
	SRR3591707	mature leaf	26.916
	SRR3591708	Shoot apex	42.457
	SRR3591709	Stem	43.251
	SRR3591710	White floral bud	75.916
	SRR3591711	White flower	46.292
	SRR3591712	Green floral bud	45.962
	SRR3591713	Yellow flower	37.612
SRP173429	SRR8316895	Juvenile bud stage	23.787
	SRR8316896	Juvenile bud stage	34.203
	SRR8316897	Juvenile bud stage	12.668
	SRR8316894	Third green stage	15.610
	SRR8316900	Third green stage	39.093
	SRR8316901	Third green stage	33.822
	SRR8316898	Complete white stage	12.419
	SRR8316899	Complete white stage	32.910
	SRR8316903	Complete white stage	29.323
	SRR8316902	Silver flowering stage	15.335
	SRR8316904	Silver flowering stage	28.349
	SRR8316905	Silver flowering stage	11.779
	SRR8316906	Gold flowering stage	36.975
	SRR8316907	Gold flowering stage	36.039
	SRR8316908	Gold flowering stage	37.755
SRP132670	SRR6706286	Control	30.517
	SRR6706287	Light intensity 50%	35.847
	SRR6706288	Light intensity 20%	33.536
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.859
	CNS0095593	Slightly white alabastrum(diploid) 2	23.140
	CNS0095594	Slightly white alabastrum(diploid) 3	20.187
	CNS0095595	Whole white alabastrum(diploid) 2	37.803
	CNS0095596	Whole white alabastrum(diploid) 3	38.882
	CNS0095597	Whole white alabastrum(diploid) 4	44.110
	CNS0095598	Silvery flower (diploied) 1	24.809
	CNS0095599	Silvery flower (diploied) 2	25.845
	CNS0095600	Silvery flower (diploied) 3	50.151
	CNS0095601	Golden flower (diploid) 1	27.927
	CNS0095602	Golden flower (diploid) 2	60.077
	CNS0095603	Golden flower (diploid) 3	58.880
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.317
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.253
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.690
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.186
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.784
	CNS0095610	Silvery flower (tetraploid) 1	40.801
	CNS0095611	Silvery flower (tetraploid) 2	43.251
	CNS0095612	Silvery flower (tetraploid) 3	51.721
	CNS0095613	Golden flower (tetraploid) 1	16.667
	CNS0095614	Golden flower (tetraploid) 2	34.061
	CNS0095615	Golden flower (tetraploid) 3	57.692
CRA001975	CRR073297	Stem 1	54.787
	CRR073298	Stem 2	50.161
	CRR073299	Stem 3	46.157
	CRR073300	Leaf 1	58.194
	CRR073301	Leaf 2	45.664
	CRR073302	Leaf 3	43.781
	CRR073303	Juvenile bud 1	48.714
	CRR073304	Juvenile bud 2	37.471
	CRR073305	Juvenile bud 3	49.454
	CRR073306	Third green 1	53.167
	CRR073307	Third green 2	38.311
	CRR073308	Third green 3	49.362
	CRR073309	Second white 1	43.367
	CRR073310	Second white 2	42.206
	CRR073311	Second white 3	55.368
	CRR073312	Silver flowering 1	62.581
	CRR073313	Silver flowering 2	69.880
	CRR073314	Silver flowering 3	62.277
	CRR073315	Gold flowering 1	25.234
	CRR073316	Gold flowering 2	35.544
	CRR073317	Gold flowering 3	35.654
	CRR073318	Tawny withering 1	36.126
	CRR073319	Tawny withering 2	27.236
	CRR073320	Tawny withering 3	31.792