Gene detail

Detail information of GWHGAAZE029929

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006346393.1	PREDICTED: probable E3 ubiquitin ligase SUD1-like [Solanum tuberosum]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|M1CFT6\|M1CFT6_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400066581}
TAIR10	AT4G34100.2	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35522434	35530122	+
GWHAAZE00000009	mRNA	35522434	35530122	+
GWHAAZE00000009	exon	35522434	35522861	+
GWHAAZE00000009	exon	35523675	35523783	+
GWHAAZE00000009	exon	35523898	35523922	+
GWHAAZE00000009	exon	35524541	35524673	+
GWHAAZE00000009	exon	35524907	35525230	+
GWHAAZE00000009	exon	35525591	35525724	+
GWHAAZE00000009	exon	35525849	35525934	+
GWHAAZE00000009	exon	35526206	35526762	+
GWHAAZE00000009	exon	35526862	35526950	+
GWHAAZE00000009	exon	35527051	35527263	+
GWHAAZE00000009	exon	35527372	35527731	+
GWHAAZE00000009	exon	35527818	35527849	+
GWHAAZE00000009	exon	35528632	35528790	+
GWHAAZE00000009	exon	35528884	35529047	+
GWHAAZE00000009	exon	35529135	35529281	+
GWHAAZE00000009	exon	35529601	35530122	+
GWHAAZE00000009	five_prime_UTR	35522434	35522513	+
GWHAAZE00000009	CDS	35522514	35522861	+
GWHAAZE00000009	CDS	35523675	35523783	+
GWHAAZE00000009	CDS	35523898	35523922	+
GWHAAZE00000009	CDS	35524541	35524673	+
GWHAAZE00000009	CDS	35524907	35525230	+
GWHAAZE00000009	CDS	35525591	35525724	+
GWHAAZE00000009	CDS	35525849	35525934	+
GWHAAZE00000009	CDS	35526206	35526762	+
GWHAAZE00000009	CDS	35526862	35526950	+
GWHAAZE00000009	CDS	35527051	35527263	+
GWHAAZE00000009	CDS	35527372	35527731	+
GWHAAZE00000009	CDS	35527818	35527849	+
GWHAAZE00000009	CDS	35528632	35528790	+
GWHAAZE00000009	CDS	35528884	35529047	+
GWHAAZE00000009	CDS	35529135	35529281	+
GWHAAZE00000009	CDS	35529601	35530122	+

Transcript Sequence
>GWHTAAZE029963 ACCAACTTTCCTCCCAAACCCTAGAAATTGAGACAGACGTACGAGGGAGAGAGAAAGTGCCCAATCTCCGACCGCCACAGATGGAGATCGCACCGGCGGTGCTGGCCTCGCACGACGGCGGTGATGAATCCTCGATTCCCTCACCCGTCGTCAATCCGTCCGCCGCTTCTACCTCTTCGTCTTCGCCTTCGTCTCCTTGTGGTTTGAATGATAGTAATAAGAACAAGGTGAATCTTAATAATAATGTTTCCAATTCGAGCAAGTATGATGATGACGATGAGGAGGAGGATGTGTGCCGGATCTGCCGGAACCCCGGTGATGCCGAGAATCCTCTCCGGTACCCCTGCGCGTGTAGCAGGAGCATCAAGTTTGTTCACCAAGACTGTCTCCTTCAGTGGCTTAATCACAGTAACGCTCGCCAATGCGAGGTCAAGGGCTGTTGCAGATGCCAGTGCATTGTAGATACCAGCAGTGGTTATTTGGTTCTCTCTCTCTCTCTGAAGGAGCTGTGGGCGATTTATAAGCTTAGAAGGAGAGGACCTCAGGTTATGTGGAGGCGTAGGTCTGCAAACATGCTTTTCGTTCTCCCTGTTTATGCTGAGAATGCTCCAGCAAGGCTTCCTTTTCAGGAGTTTGTAGTTGGGATGGCTATGAAAGCATGCCATGTCTTGCAATTCTTTTTGCGCCTTAGCTTTGATGCTGACAGAGAAGATGAAGCAGACAGAAATGGTGCTCGTGGTGCAAGACGACCTCCTGTACAAGTTAATAGAAATTTTGTTGGTGAGGGAAATGGTGATGATGCTAATGGAGCACAAGGAATTGCTGGGGCTGGTCAGATGATAAGAAGGAATGCAGAGAATGTTGCTGCCAGGTGGGAGATGCAGGCAGCTCGCCTTGAGGCTCATGTTGAGCAGATGTTTGATGGTTTAGATGATGCTGATGGAGCAGAGGATGTACCCTTTGACGAGCTAGTAGGAATGCAGGGGCCTGTTTTTCATCTGGTGGAAAATGCATTCACCTACAGTGAAGTGAGGATGCATGTTGAATTTACAAATTTGTTCCTCATAAAAGGTAAGGGTCTAAGTATCTTCCCTGTTTCAACTGTTCAAGTGAGAATGTGGCGGGGAATCGAAACCATCGCCTCTGGTGGAAACGTTAGAAGCACGACCCACACCACCAGGGGTGGACCCAGTAAAGGGGCTGGGGTTGCAGATCAATTGAGCCCCCACTTGCATTTGGGTTCTTGCAAGCAATATGATATTCCTTGGAGTTGTAATATTTGTGCCCTTCTCACTAGGACGGATCATACTCTATTATTTGTCATGGATTTTGTCCTCGCTACCAGTCCAATGTTGTCTAAAGTTGTACCGCTTACAGAATCGGCTCTTTCCTTGGCGAATATCACATTGAAGAATGCATTCACTGCAGTTGAGAATTTGACATCTAATAACCAAGAAAACAATCTGCTTGACCAGGTTGGGGAAATGTTGACTGGAAATGCTACGGGACAGACTGAAGCATTGAATAACGTTACCACACCACTTTCGGCTGATCTCCTGAAAGGGGCATCTATTGGGGCATCACGGCTTTCTGATGTTACAACTCTTGCTGTTGGCTATATGTTTATATTCTCTTTGGTTGTTTTCTACCTTGGAATTGTTGCATTAATTCGATACACTAAAGGTGAGCCTTTGACCATGGGGAGGTTCTATGGTATTGCTTCAATTGCAGAGACAATTCCATCCCTCTTCAGGCAGTTCTTGGCAGCGATGAGGCACCTGATGACTATGATAAAGAGAGTTGAGTTCTTCTCTGTCTCTCCATTAGCAAGCTCCTTGGTTCATTGGGTTGTGGGGATTGTATACATGCTACAAATAAGCATTTTGTTTTTGCGCAATGGAGTTCTTTACTTCCTTCGTGATCCAGCTGACCCTAATTACAATCCATTCCGTGATTTGATTGATGATCCTGTACACAAGCATGCTCGTAGGGTCCTTTTGTCTGTGGCTGTTTATGGAAGTCTGATAGTGATGCTGGTGTTCTTGCCTGTTAAACTTGCCATGCGAATGGCTCCCTCCATTTTTCCTCTTGATATATCTGTATCTGATCCATTTACAGAAATTCCTGCCGACATGCTGCTCTTTCAAATCTGCATTCCATTTGCTATTGAGCATTTTAAGTTGCGGACAACAATCAAATCTCTTCTCCGCTATTGGTTTACTGCAGTTGGGTGGGCACTTGGATTAACAGATTTCTTACTGCCCAGACCTGAGGATAACGGGCTCAGGATAATGGAAACGAGGGAGCCACTAAGGCAGGATAGACTACATGCTCAACTAGGTGGACAAGATCGGGCCTTAGGGCTTGTGGCTCACGATGACTTGAACAGAGCTAGGCATGTGGCCCCAAATGCTGATCTTTCAGAAGAGTATGATGGTGATGAACAATCTGAGTCAGATTGGAGGACAAGAGTGGAGTATAATAAGCGTGCAGGTATGGCTTTGTGCTTCATTGTGCTGTTGCTTGTGGTGGCTTGGATGACTCTTCTTGTTTTCAATTCTGCCTTAATAGTTGTACCAATTTCACTTGGCCGAGCACTCTTCAATGCTGTCCCGCTTCTTCCAATAACACATGGCATCAAGTGCAACGATCTATACGCTTTCGTCATTGGAAGCTATGTCATTTGGACTGCTGTAGCTGGAGCCCGCTATTCAATCGAGCACATTAAAACAGGAAGGGCTACAGTGTTACTGGGTCACATTTGGAAATGGTGTGGCATCGTTTTGAAGAGTTCTGCACTGTTGTCTATTTGGATATTTGTCATCCCAGTGTTAATTGGATTGCTCTTTGAACTTCTGGTGATTGTGCCAATGAGAGTGCCTGTGGATGAAAGCCCGGTTTTCCTTCTGTATCAGGATTGGGCTTTGGGGCTCATTTTTCTTAAGATCTGGACTAGACTGGTTATGCTGGATCACATGATGCCCCTAGTGGATGAGAGCTGGCGATTAAAATTCGAAAGGGTGAGAGAAGATGGTTTCTCCAGGCTGCAAGGCTTTTGGGTGCTGCGGGAGATAGTTTTACCCATCATCATGAAACTCCTAACCGCCCTATGCGTCCCCTACGTTCTAGCTAGAGGGGTCTTCCCGGTTTTGGGGTACCCACTAGTGGTCAACTCGGCCGTATACCGGTTCGCCTGGCTAGGTTGCCTAGCCTTCAGCTTATTGTGCTTCTGCGCCAAAAGATTCCATGTCTGGTTCACCAACCTCCACAACTCTATACGTGACGATCGCTATCTGATTGGCCGAAGGCTACATAACTTTGGTGAAGATAAAGTGGTGAGAGAGAATGAAGCAGCGATTGCTTCAGAGGGACTGAGCTCTAATGAAGAAGGAAATGTTGGATTATTAGTTGGTAGTGAAGGGGAAGGTGAAGTTGTTGATGTTGGGATTAGGCAGAGGCGTGCTATCCAGCAGGACGCGTGA

Network for GWHGAAZE029929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12906.8	RINGv	72	117	2.40E-11

Protein Sequence

>GWHPAAZE029947
MEIAPAVLASHDGGDESSIPSPVVNPSAASTSSSSPSSPCGLNDSNKNKVNLNNNVSNSSKYDDDDEEEDVCRICRNPGDAENPLRYPCACSRSIKFVHQDCLLQWLNHSNARQCEVKGCCRCQCIVDTSSGYLVLSLSLKELWAIYKLRRRGPQVMWRRRSANMLFVLPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFDADREDEADRNGARGARRPPVQVNRNFVGEGNGDDANGAQGIAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTYSEVRMHVEFTNLFLIKGKGLSIFPVSTVQVRMWRGIETIASGGNVRSTTHTTRGGPSKGAGVADQLSPHLHLGSCKQYDIPWSCNICALLTRTDHTLLFVMDFVLATSPMLSKVVPLTESALSLANITLKNAFTAVENLTSNNQENNLLDQVGEMLTGNATGQTEALNNVTTPLSADLLKGASIGASRLSDVTTLAVGYMFIFSLVVFYLGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKRVEFFSVSPLASSLVHWVVGIVYMLQISILFLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPEDNGLRIMETREPLRQDRLHAQLGGQDRALGLVAHDDLNRARHVAPNADLSEEYDGDEQSESDWRTRVEYNKRAGMALCFIVLLLVVAWMTLLVFNSALIVVPISLGRALFNAVPLLPITHGIKCNDLYAFVIGSYVIWTAVAGARYSIEHIKTGRATVLLGHIWKWCGIVLKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRLKFERVREDGFSRLQGFWVLREIVLPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLAFSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDKVVRENEAAIASEGLSSNEEGNVGLLVGSEGEGEVVDVGIRQRRAIQQDA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10661	MARCH6, DOA10	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.660
	SRR3591706	second leaf	17.170
	SRR3591707	mature leaf	14.260
	SRR3591708	Shoot apex	24.578
	SRR3591709	Stem	25.647
	SRR3591710	White floral bud	41.523
	SRR3591711	White flower	27.044
	SRR3591712	Green floral bud	27.140
	SRR3591713	Yellow flower	21.675
SRP173429	SRR8316895	Juvenile bud stage	13.997
	SRR8316896	Juvenile bud stage	23.025
	SRR8316897	Juvenile bud stage	6.619
	SRR8316894	Third green stage	7.671
	SRR8316900	Third green stage	24.283
	SRR8316901	Third green stage	23.742
	SRR8316898	Complete white stage	7.005
	SRR8316899	Complete white stage	19.211
	SRR8316903	Complete white stage	16.724
	SRR8316902	Silver flowering stage	9.812
	SRR8316904	Silver flowering stage	14.637
	SRR8316905	Silver flowering stage	7.170
	SRR8316906	Gold flowering stage	21.356
	SRR8316907	Gold flowering stage	22.325
	SRR8316908	Gold flowering stage	17.438
SRP132670	SRR6706286	Control	16.446
	SRR6706287	Light intensity 50%	19.146
	SRR6706288	Light intensity 20%	18.855
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.971
	CNS0095593	Slightly white alabastrum(diploid) 2	19.834
	CNS0095594	Slightly white alabastrum(diploid) 3	23.667
	CNS0095595	Whole white alabastrum(diploid) 2	29.544
	CNS0095596	Whole white alabastrum(diploid) 3	30.769
	CNS0095597	Whole white alabastrum(diploid) 4	30.893
	CNS0095598	Silvery flower (diploied) 1	20.270
	CNS0095599	Silvery flower (diploied) 2	20.026
	CNS0095600	Silvery flower (diploied) 3	26.819
	CNS0095601	Golden flower (diploid) 1	22.652
	CNS0095602	Golden flower (diploid) 2	31.706
	CNS0095603	Golden flower (diploid) 3	30.983
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.464
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.473
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.199
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.574
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.026
	CNS0095610	Silvery flower (tetraploid) 1	21.570
	CNS0095611	Silvery flower (tetraploid) 2	20.914
	CNS0095612	Silvery flower (tetraploid) 3	25.746
	CNS0095613	Golden flower (tetraploid) 1	12.294
	CNS0095614	Golden flower (tetraploid) 2	20.943
	CNS0095615	Golden flower (tetraploid) 3	27.137
CRA001975	CRR073297	Stem 1	29.856
	CRR073298	Stem 2	29.965
	CRR073299	Stem 3	27.915
	CRR073300	Leaf 1	32.978
	CRR073301	Leaf 2	28.522
	CRR073302	Leaf 3	20.753
	CRR073303	Juvenile bud 1	29.416
	CRR073304	Juvenile bud 2	21.815
	CRR073305	Juvenile bud 3	26.385
	CRR073306	Third green 1	31.007
	CRR073307	Third green 2	25.559
	CRR073308	Third green 3	30.812
	CRR073309	Second white 1	24.432
	CRR073310	Second white 2	25.696
	CRR073311	Second white 3	26.552
	CRR073312	Silver flowering 1	33.843
	CRR073313	Silver flowering 2	36.994
	CRR073314	Silver flowering 3	33.334
	CRR073315	Gold flowering 1	15.759
	CRR073316	Gold flowering 2	21.983
	CRR073317	Gold flowering 3	18.701
	CRR073318	Tawny withering 1	24.764
	CRR073319	Tawny withering 2	21.201
	CRR073320	Tawny withering 3	22.658