Gene detail

Detail information of GWHGAAZE029872

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042796.1	4.9272E-167	Concanavalin A-like lectin protein kinase family protein, putative [Theobroma cacao]
COG	YP_001958461.1	5E-10	hypothetical protein Aasi_1443
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	8E-98	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|A0A061E1Y7\|A0A061E1Y7_THECC	2E-167	Concanavalin A-like lectin protein kinase family protein, putative {ECO:0000313\|EMBL:EOX98627.1}
TAIR10	AT5G10530.1	3E-68	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34669782	34671719	+
GWHAAZE00000009	mRNA	34669782	34671719	+
GWHAAZE00000009	exon	34669782	34671063	+
GWHAAZE00000009	exon	34671289	34671719	+
GWHAAZE00000009	CDS	34669782	34671063	+
GWHAAZE00000009	CDS	34671289	34671719	+

Transcript Sequence
>GWHTAAZE029906 ATGATCCGTGGCAACGATCAGACTTATTTCACCTCCCAAGGCCTCCAAGTCACGCCGAATGAGAGGGGCACAGACCCGAGGTCTAGAACCGGCCGAGCCTCTTATATCAGAGCTTTTCACCTTTGGGACAATTCTTCTGGAGAATTGGCAGACTTTAGCACCAGTTTCTCCTTTGTGATTGACTCATCCGGGAATTCGCCCTATGCTGATGGAATTGTATTTTTCCTAGCTCAAAATAATTCGGTGATCACAGCAGGTGCATCCCTCGGCCTTCCAATCAATCCTGCCACGTTAAACGCCACCGATCAATTTGTTGCAGTGGAGTTCGATACTTTTTGGAACGCTTGGGATCCAATGAACTCAACAAACTTGCCAATTGGTGAACATGTAGGTATTAACATCGCTTCTCTCAATTCTAGTGCGTTTGAGAAATGGTGGGCCAATATTACTAGCGGGCGAGAAAACGAGGCTTGGATTAGTTATAATGCTGCTTCTCAGAATCTTAGTGTCGTGTTCACTGGTTTTCAAAATAATACAAGAGTAATACAAAACGGACTTCACTACACCGTTGATCTGAGGAAGGAGTTGCCCGAATGGGTTATTTTTGGCTTCACAGCCTCAACAGGAACATATTTCCAGGTAAATACAGTCACATCGTGGAGTTTTAATAGCTCGATTTTACGTAGTGATGAGAATCAAGAAAGGGGGAAAAACACAAGGACGGGACTTGTGGTGGGGTTGAGTGTTGGCTTAGGCGTTTTGGTTGGTGCGTTGATTTTGGTTGGGTTTGGCTTCTGGAAAAAAAGGAAATCAAAGAGAAAAGAATTAGAGCTTGGCAGTGATGACTACATGGACAATGAATTCGAAATGGGCAGCGGCCCTAAGAAGTTCTCATATGATGAATTAGCTCATGCAACTAATAACTTTGCAGAGGATGAGAAGCTTGGAGAGGGAGGGTTTGGTGGGGTGTACAGGGGGTTCTCAAGGGAATTGAATTCCTATGTTGCTGTCAAGAGGGTATCAAGAGAATCCAAACAAGGGATAAAGGAATACGCATCAGAAGTAAAGATCATTAGTCGATTGAGGCATAAGAACCTTGTACAACTCATTGGTTGGTGCCACCAAAGAGGAGAGCTCCTACTTGTTTATGAGTTTATGGAAAATGGCAGCTTAGACTCACATCTCTTCAAAGAAAGGAGCTTGTTGACATGGGGAGTAAGGTTCAAAATAGCACAAGGAATTGCTTCCGCATTGCTCTATCTACACGAAGAATGGGAGCAATCATGTGGAAGAAAACCAATCGATTTTAAGGCACAAGAAAATCAAATAAGAATGGTTGAGTGGGTTTGGGACCTCTATGGAATGGGAAAGATACTTGAATCAGCAGATCCAGAACTATGCGAAGATTTTGATGAACAAGAAATGGAATATTTGATGATTGTTGGGCTTTGGTGCGCTCACCCAGACTGGAAGCTTAGGCCATCCATAAGACAAGCTATTCATGTCCTTAACCTTGAAGCTCCATTGCCCATTCTCCCCTCAAAGATGCCCATGGCAACATATTCAGCCCCTCCCACATCTTCACTTTCTTTGTCCTACTATCACAACAGCCAAATCCAGTCTTCGAGCTGTAGTTACAACACAGATTCCACAAAGGTCACCACGTCTTCTGCAGCTTCTTCTCCCTCCGCATCACTTTTGAACACACGTTAA

Network for GWHGAAZE029872

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	10	233	3.50E-53
PF00069.26	Pkinase	310	424	1.00E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.867
	SRR3591706	second leaf	1.013
	SRR3591707	mature leaf	0.943
	SRR3591708	Shoot apex	0.958
	SRR3591709	Stem	3.102
	SRR3591710	White floral bud	2.334
	SRR3591711	White flower	4.113
	SRR3591712	Green floral bud	1.226
	SRR3591713	Yellow flower	4.321
SRP173429	SRR8316895	Juvenile bud stage	1.803
	SRR8316896	Juvenile bud stage	2.044
	SRR8316897	Juvenile bud stage	0.608
	SRR8316894	Third green stage	0.675
	SRR8316900	Third green stage	2.015
	SRR8316901	Third green stage	1.786
	SRR8316898	Complete white stage	1.114
	SRR8316899	Complete white stage	2.768
	SRR8316903	Complete white stage	0.965
	SRR8316902	Silver flowering stage	0.815
	SRR8316904	Silver flowering stage	1.262
	SRR8316905	Silver flowering stage	0.660
	SRR8316906	Gold flowering stage	5.637
	SRR8316907	Gold flowering stage	4.111
	SRR8316908	Gold flowering stage	6.429
SRP132670	SRR6706286	Control	2.541
	SRR6706287	Light intensity 50%	1.906
	SRR6706288	Light intensity 20%	1.934
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.899
	CNS0095593	Slightly white alabastrum(diploid) 2	4.295
	CNS0095594	Slightly white alabastrum(diploid) 3	3.581
	CNS0095595	Whole white alabastrum(diploid) 2	4.482
	CNS0095596	Whole white alabastrum(diploid) 3	0.965
	CNS0095597	Whole white alabastrum(diploid) 4	3.314
	CNS0095598	Silvery flower (diploied) 1	2.227
	CNS0095599	Silvery flower (diploied) 2	4.804
	CNS0095600	Silvery flower (diploied) 3	4.079
	CNS0095601	Golden flower (diploid) 1	3.358
	CNS0095602	Golden flower (diploid) 2	5.447
	CNS0095603	Golden flower (diploid) 3	5.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.818
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.853
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.759
	CNS0095610	Silvery flower (tetraploid) 1	6.044
	CNS0095611	Silvery flower (tetraploid) 2	5.050
	CNS0095612	Silvery flower (tetraploid) 3	3.956
	CNS0095613	Golden flower (tetraploid) 1	4.416
	CNS0095614	Golden flower (tetraploid) 2	6.227
	CNS0095615	Golden flower (tetraploid) 3	2.944
CRA001975	CRR073297	Stem 1	2.823
	CRR073298	Stem 2	1.944
	CRR073299	Stem 3	1.286
	CRR073300	Leaf 1	1.786
	CRR073301	Leaf 2	1.377
	CRR073302	Leaf 3	1.586
	CRR073303	Juvenile bud 1	1.600
	CRR073304	Juvenile bud 2	1.168
	CRR073305	Juvenile bud 3	3.220
	CRR073306	Third green 1	0.258
	CRR073307	Third green 2	0.677
	CRR073308	Third green 3	1.000
	CRR073309	Second white 1	1.284
	CRR073310	Second white 2	1.342
	CRR073311	Second white 3	0.724
	CRR073312	Silver flowering 1	3.339
	CRR073313	Silver flowering 2	3.526
	CRR073314	Silver flowering 3	4.652
	CRR073315	Gold flowering 1	1.225
	CRR073316	Gold flowering 2	2.132
	CRR073317	Gold flowering 3	2.209
	CRR073318	Tawny withering 1	6.805
	CRR073319	Tawny withering 2	9.529
	CRR073320	Tawny withering 3	2.900